Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00927 ATGGGGAAGAAAGGAAGTAGTTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCAACAAAAGATAGTGACAAAAGAAGTGCTAGAAGAAGAGAAGATTGTGATCAAGAAGAAGATGAAGAAAAGAAGAGGGAAAAAAGAAGATGGATTTTTAGAAAACCAGTGAATCATGAAACAGTGAATAATACTCAACAAAGTACACCAACAAAGGTTAAGAATGATGTTGCTACTGTTACAAATGTTGTTTCAAGGACAGATCAAGATGAAAAACATGCTCTTGCTGTTGCTATGGCTACAGCTGAAGCAGCAAGAGCTACTGCTCAAGCTGCTGTTGAGGTTGCTAGGTTGACTAAGCCTTCAAATCATGCTAGGGAGCATTATGCTGCTGTTGTGATTCAAACTTCTTTTAGAGGTTATTTGGCAAGAAGAGCGCTTCGTGCACTTAAGGGATTGGTGAAGTTACAAGCTTTAGTGAGAGGTCATAATGTTAGGAAACAAGCAAAGATGACTTTAAGGTGCATGCAAGCTCTTGTTAGAGTACAAGCAAGAGTTCTTGATCAAAGGATAAGGTCTACTTCACATGAAGGAAGTAGAAAATCAGCCTTTAGTGACACGGCAAGTGTTTGGGATTCGCGGTATCTTCAAGATATTTCAGATAGGAAATCAATATCAAGAGAAGGAAGTAGTGTTGCAGATGATTGGGACGATCGTCCACACACTGTTGAAGAAGTTAAGGCTGTGTTGCAACAGAGGAAGGAAGCAGCTATGAAGAGGGAGAAGTCCTTGTCCCAAGCTTTTTCACAACAGATTTGGAGAAATGGTAGGACTTCATCGATTGGAAATGAAGATGAACTTGAAGAAAGACCAAAATGGCTAGATAGATGGATGGCTACAAAACCATGGGAGAATAGAGGAAGAGCTTCAACTGATCAAAGAGACTCTATCAAGACCGTAGAAGTTGACACATCTCAACCTTATTCATATCTCGGATCAAATTACAGAAGATCGCATCCGAACTATCAATATAATCCACACCACCAACCACAAAGACATTCCATTGCTTCACCACTCCACAGAACACACCAAAATGGATCCATTCACAACCAATCCATCACTACACCATCTCCGGCGAAATCACGACCTATCCAAGTCCGGTCATCAAGCCCTCGTTGTGTTCGAGAAGATAGAAGCTACCACCACACTTCTCAAACACCTAGCTTAAGGTCTAATTATCATTACAATGGCAATTTGTACCAAAATAGTAGGGTAGGAACAAGTAGTAATGGTAGTAACGGCGTTGCTTCTGCTACATCTACATTGCCTAATTACATGCAAGCAACCGAGTCTGCGAAGGCTCGAATCCGGTCGCAGAGTGCACCGAGACAAAGGCCATCGACACCGGAGAGAGATAGATCCGGATCAGTAAAGAAAAGGCTTTCTTTTCCTGCTCCTGATCCTTATAATGTAGGAGGAGCTGCAGGTTATGGAAATTATGGACACAGTTTAAGGAGTCCAAGTTTCAAAAGTGTGAATGTAACATCACATTACGGGTTGGAGCAAAATTCGAATTACTCTTCTTGTTATACCGAGAGTCTTGGTGGCGAGGTTTCGCCTTCTTCAACCGGTGACCTTAGAAGGTGGTTGAGATGA 1653 0.418 MGKKGSSSWLTAVKRAFRSPTKDSDKRSARRREDCDQEEDEEKKREKRRWIFRKPVNHETVNNTQQSTPTKVKNDVATVTNVVSRTDQDEKHALAVAMATAEAARATAQAAVEVARLTKPSNHAREHYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSTSHEGSRKSAFSDTASVWDSRYLQDISDRKSISREGSSVADDWDDRPHTVEEVKAVLQQRKEAAMKREKSLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDSIKTVEVDTSQPYSYLGSNYRRSHPNYQYNPHHQPQRHSIASPLHRTHQNGSIHNQSITTPSPAKSRPIQVRSSSPRCVREDRSYHHTSQTPSLRSNYHYNGNLYQNSRVGTSSNGSNGVASATSTLPNYMQATESAKARIRSQSAPRQRPSTPERDRSGSVKKRLSFPAPDPYNVGGAAGYGNYGHSLRSPSFKSVNVTSHYGLEQNSNYSSCYTESLGGEVSPSSTGDLRRWLR 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00927 550 MobiDBLite consensus disorder prediction 319 387 - -
Trre16g00927 550 Pfam Protein of unknown function (DUF4005) 389 495 IPR025064 -
Trre16g00927 550 MobiDBLite consensus disorder prediction 303 489 - -
Trre16g00927 550 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Trre16g00927 550 MobiDBLite consensus disorder prediction 1 46 - -
Trre16g00927 550 SMART iq_5 148 169 IPR000048 GO:0005515
Trre16g00927 550 SMART iq_5 125 147 IPR000048 GO:0005515
Trre16g00927 550 MobiDBLite consensus disorder prediction 18 46 - -
Trre16g00927 550 FunFam IQ-domain 11 125 176 - -
Trre16g00927 550 Gene3D - 123 185 - -
Trre16g00927 550 MobiDBLite consensus disorder prediction 303 318 - -
Trre16g00927 550 PANTHER IQ-DOMAIN 5-RELATED 1 484 - -
Trre16g00927 550 MobiDBLite consensus disorder prediction 403 464 - -
Trre16g00927 550 MobiDBLite consensus disorder prediction 529 550 - -
Trre16g00927 550 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Trre16g00927 550 Pfam IQ calmodulin-binding motif 153 169 IPR000048 GO:0005515
Trre16g00927 550 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00927 Trre-Chr16 7251083 7253967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00927 1 550 IQD Protein Family AT1G01110 57.719 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00927 - - gmx:100799284 827.009