Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00926 ATGGTGAGTGGTAACAATCAAGACCAATATAATGATACAACATTTACCAAACTTTTTGTTGGAGGATTAGCTTGGGAGACTCAAAGGGACACAATGAGAAATTATTTTGAACAATTTGGAGAGATCTTAGAAGCTGTTGTGATCACAGATAAGTATACTGGAAGATCCAAAGGTTATGGTTTTGTCACATTTAAGGATCCTGAGGCAGCTATAAGGGCATGTCAGAATCCATCTCCAGTTATTGATGGTAGGAGAGCAAATTGCAATATTGCTTCTCTTGGTGCAAACAAGAATAGATCATTACCTCTTCAGCATCATGGAAGGTTTAGGCCTCCACATGGAGTGGTAGCATCAACTCCTTATCATGGTTCTTCATCTACAATTTTCCATCAACCGACTAGGCAATACAATTTACCTTATTCAGCTTATGGATATTCTGGCTATTCACAAGACACCTTGTATCCTCAAAGCTATTACAATGTTTATGGAGTTCAACAATATTCACCTTACTATCCATCTGTTGGAGCTGCTGGAGCAATGGGGATGATCCAAAATGTCTACCCTTATTATGGTCAATATGCACAAAATATTCATGGCCAAGGCTTTGGAATTCAATACCCCCAAGTGACACAAATTCCAGTTTTACCTCAGCATTATAGTTCACAAGGAATATTGTCATTTCCTTCTTCAGTAGCAATGCCAACCATTAGTGCAGCAACAGTAACTGCAACCGCAACTACTGCAATCGCAACATCTGTTGCACTAACAGGGGTTGGTAGTTCACAAGCCACTGGAACAGCTGAGCAACAACATTCTACATCTTGA 825 0.3964 MVSGNNQDQYNDTTFTKLFVGGLAWETQRDTMRNYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLPLQHHGRFRPPHGVVASTPYHGSSSTIFHQPTRQYNLPYSAYGYSGYSQDTLYPQSYYNVYGVQQYSPYYPSVGAAGAMGMIQNVYPYYGQYAQNIHGQGFGIQYPQVTQIPVLPQHYSSQGILSFPSSVAMPTISAATVTATATTAIATSVALTGVGSSQATGTAEQQHSTS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00926 274 Gene3D - 3 102 IPR012677 -
Trre16g00926 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 108 IPR000504 GO:0003723
Trre16g00926 274 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Trre16g00926 274 PANTHER BOULE-RELATED 7 247 - -
Trre16g00926 274 CDD RRM_RBM24_RBM38_like 16 91 - -
Trre16g00926 274 SMART rrm1_1 17 89 IPR000504 GO:0003723
Trre16g00926 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00926 Trre-Chr16 7241402 7243677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00926 12 92 C2H2 Transcription Factor Family AT2G19380 41.975 4.22e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00926 - - gmx:100786208 411.764