Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00925 ATGTCTCAACAAAGACATCCTCATATGGTGAGTGGTAACAATCAAGACCAATATAATGATACAACATTTACCAAACTTTTTGTTGGAGGATTAGCTTGGGAGACTCAAAGGGACACAATGAGAAATTATTTTGAACAATTTGGAGAGATCTTAGAAGCTGTTGTGATCACAGATAAGTATACTGGAAGATCCAAAGGTTATGGTTTTGTCACATTTAAGGATCCTGAGGCAGCTATAAGGGCATGTCAGAATCCATCTCCAGTTATTGATGGTAGGAGAGCAAATTGCAATATTGCTTCTCTTGGTGCAAACAAGAATAGATCATTACCTCTTCAGCATCATGGAAGGTTTAGGCCTCCACATGGAGTGGTAGCATCAACTCCTTATCATGGTTCTTCATCTACAATTTTCCATCAACCGACTAGGCAATACAATTTACCTTATTCAGCTTATGGATATTCTGGCTATTCACAAGACACCTTGTATCCTCAAAGCTATTACAATGTTTATGGAGTTCAACAATATTCACCTTACTATCCATCTGTTGGAGCTGCTGGAGCAATGGGGATGATCCAAAATGTCTACCCTTATTATGGTCAATATGCACAAAATATTCATGGCCAAGGCTTTGGAATTCAATACCCCCAAGTGACACAAATTCCAGTTTTACCTCAGCATTATAGTTCACAAGGAATATTGTCATTTCCTTCTTCAGTAGCAATGCCAACCATTAGTGCAGCAACAGTAACTGCAACCGCAACTACTGCAATCGCAACATCTGTTGCACTAACAGGGGTTGGTAGTTCACAAGCCACTGGAACAGCTGAGCAACAACATTCTACATCTTGA 849 0.3958 MSQQRHPHMVSGNNQDQYNDTTFTKLFVGGLAWETQRDTMRNYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLPLQHHGRFRPPHGVVASTPYHGSSSTIFHQPTRQYNLPYSAYGYSGYSQDTLYPQSYYNVYGVQQYSPYYPSVGAAGAMGMIQNVYPYYGQYAQNIHGQGFGIQYPQVTQIPVLPQHYSSQGILSFPSSVAMPTISAATVTATATTAIATSVALTGVGSSQATGTAEQQHSTS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00925 282 Gene3D - 1 110 IPR012677 -
Trre16g00925 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 116 IPR000504 GO:0003723
Trre16g00925 282 PANTHER BOULE-RELATED 9 255 - -
Trre16g00925 282 SUPERFAMILY RNA-binding domain, RBD 5 115 IPR035979 GO:0003676
Trre16g00925 282 SMART rrm1_1 25 97 IPR000504 GO:0003723
Trre16g00925 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Trre16g00925 282 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00925 Trre-Chr16 7241378 7243677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00925 20 100 C2H2 Transcription Factor Family AT2G19380 41.975 4.12e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00925 - - gmx:100786208 420.624