Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00924 ATGTCTCAACAAAGACATCCTCATATGGTGAGTGGTAACAATCAAGACCAATATAATGATACAACATTTACCAAACTTTTTGTTGGAGGATTAGCTTGGGAGACTCAAAGGGACACAATGAGAAATTATTTTGAACAATTTGGAGAGATCTTAGAAGCTGTTGTGATCACAGATAAGTATACTGGAAGATCCAAAGGTTATGGTTTTGTCACATTTAAGGATCCTGAGGCAGCTATAAGGGCATGTCAGAATCCATCTCCAGTTATTGATGGTAGGAGAGCAAATTGCAATATTGCTTCTCTTGGTGCAAACAAGAATAGATCATTACCTCTTCAGCATCATGGAAGGTTTAGGCCTCCACATGGAGTGGTAGCATCAACTCCTTATCATGGTTCTTCATCTACAATTTTCCATCAACCGACTAGGCAATACAATTTACCTTATTCAGCTTATGGATATTCTGGCTATTCACAAGACACCTTGTATCCTCAAGTAAGTGTTAATAGCTATTACAATGTTTATGGAGTTCAACAATATTCACCTTACTATCCATCTGTTGGAGCTGCTGGAGCAATGGGGATGATCCAAAATGTCTACCCTTATTATGGTCAATATGCACAAAATATTCATGGCCAAGGCTTTGGAATTCAATACCCCCAAGTGACACAAATTCCAGTTTTACCTCAGCATTATAGTTCACAAGGAATATTGTCATTTCCTTCTTCAGTAGCAATGCCAACCATTAGTGCAGCAACAGTAACTGCAACCGCAACTACTGCAATCGCAACATCTGTTGCACTAACAGGGGTTGGTAGTTCACAAGCCACTGGAACAGCTGAGCAACAACATTCTACATCTTGA 861 0.3937 MSQQRHPHMVSGNNQDQYNDTTFTKLFVGGLAWETQRDTMRNYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLPLQHHGRFRPPHGVVASTPYHGSSSTIFHQPTRQYNLPYSAYGYSGYSQDTLYPQVSVNSYYNVYGVQQYSPYYPSVGAAGAMGMIQNVYPYYGQYAQNIHGQGFGIQYPQVTQIPVLPQHYSSQGILSFPSSVAMPTISAATVTATATTAIATSVALTGVGSSQATGTAEQQHSTS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00924 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 116 IPR000504 GO:0003723
Trre16g00924 286 PANTHER BOULE-RELATED 9 259 - -
Trre16g00924 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Trre16g00924 286 SMART rrm1_1 25 97 IPR000504 GO:0003723
Trre16g00924 286 SUPERFAMILY RNA-binding domain, RBD 5 115 IPR035979 GO:0003676
Trre16g00924 286 CDD RRM_RBM24_RBM38_like 24 99 - -
Trre16g00924 286 Gene3D - 1 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00924 Trre-Chr16 7241378 7243677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00924 20 100 C2H2 Transcription Factor Family AT2G19380 41.975 4.52e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00924 - - gmx:100788899 413.69