Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00921 ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTTCCTCCTGGATTTAGGTTTCATCCAACTGAAGAAGAACTTCTTCAATACTATTTGAGGAAAAAAGTCTCTTATGAGAAGATTGACCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATTCAAGAGAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTACTTCTTCAGCCACAAGGACAAGAAGTATCCAACCGGGACGCGAACCAATCGCGCCACGGCTGCAGGCTTCTGGAAAGCCACAGGCCGTGACAAAGTTATATATAGCAATGGAAAAAGGATTGGAATGAGAAAAACTCTTGTTTTCTATAAAGGTCGTGCCCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGATTAGACGATAATACTACCACCAACGACACCAATCTGGTGTCAAATGTTATTGGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGATAGTCCTTTAGGCTCAGGAGATGGAAGAAGAAACCAACACTTGTATGATGCTTGTGATGAAGGAGCTTTGGAGCAGATACTTCAACAAATGGGAAGGGGTTGCAAGGAAGAGAATTATGAAGCAAATTACAATAATTATGGAAGGTTTACAAGGCCTTTTGATCAAACTAGCATGAACAACAATGGTGGTTATAATAATGAAAGGTACATGAAACTTCCAAGCTTAGAGAGTCCAAAATCAACAAGCATGGACAACAATGACAACAACAATGATCATCATCATAATGACAATAATGAGTACCATGCACTAATTCAAGAAAATGAAGGGTCATTCACTGATCACCATAATAACATGGTTAATAACCCATTAGAGGCATCATCATCATCAATGTTGATAGCATCATGTGGTGGTGGTCTCACTAATTGGGTAGCTTTGGATAGACTTGTTGCTTCTCAATTAAATGGACAAACTGAGGCTTCTAGGCAATTGGCTTGCTTCAATGACCCCACAATGGGATATTGCACTAATGATCATGATCTTCAACTTCCTACCCTTAGATCATCATCATCAACTTCATCATTATCAACACAGGCCAAAACTACTACTGCTACTACTACTGCTACCACTACTGTTAGTTCTTATATTAGTCCCTCACAAGATTATGGCAGTGAGATTGACCTTTGGAACTTCACTCGATCAACTTCTTCCTTGTTGACATCGTCTGAACCACTATGCCACGTGTCGAATACATCTGTGTGA 1311 0.3966 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTTNDTNLVSNVIGDGGQEEGWVVCRIFKKKNHLKTLDSPLGSGDGRRNQHLYDACDEGALEQILQQMGRGCKEENYEANYNNYGRFTRPFDQTSMNNNGGYNNERYMKLPSLESPKSTSMDNNDNNNDHHHNDNNEYHALIQENEGSFTDHHNNMVNNPLEASSSSMLIASCGGGLTNWVALDRLVASQLNGQTEASRQLACFNDPTMGYCTNDHDLQLPTLRSSSSTSSLSTQAKTTTATTTATTTVSSYISPSQDYGSEIDLWNFTRSTSSLLTSSEPLCHVSNTSV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00921 436 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Trre16g00921 436 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Trre16g00921 436 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Trre16g00921 436 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Trre16g00921 436 FunFam NAC domain-containing protein 24 180 - -
Trre16g00921 436 MobiDBLite consensus disorder prediction 258 281 - -
Trre16g00921 436 MobiDBLite consensus disorder prediction 370 391 - -
Trre16g00921 436 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00921 Trre-Chr16 7181789 7183423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00921 1 435 NAC Transcription Factor Family AT2G46770 53.499 1.86e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g00921 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00921 - - gmx:100793308 594.349