Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00910 ATGAATGAAACAGAGGTGAAAGAAGAGAAGATGAACGATCATGACAATGTTGATGATCAATCTAAAGAGGTTTTTAGATGGGAAATGCTTCTACCAAAGATTAATGTTACTGTTCTGCTTGTTGAATCTGATCGTGCTACTCGAAGATTAATTACTGCAATTCTCAAGAATTGCAGTTACATAGTTATTGCAGTTTCTAATGGATTAAAGGCATGGGAGACATTGAAGACGAAGGCAACTGACATTGATCTCATATTAACAGAAATGGAGTTGCCTGCAATATCTGGATTAGAACTCCTTTCTAAAATTATGGAGCATGAAATTTGCAAAAACATTCCCGTTATAATGATGTCTTCTCACGATTCACGTATCACGGCAATGAATTGCATGTTTAAAGGTGCAGCTGATTTTCTTATCAAACCTGTTCGGAAGAATGAGCTTACGAACTTATGGCAGCATGTATGGAGAAAGCTTGTTATTAACAGGCCTCTCCAAAATATAAGATCTGCTCAAAAGAATCTTAAAATTGCCACAGAAGACAATTTTGCCGGCAATCAATCAACTGATTCTGATTCTGTGGCTTCCTCACAGAAAAATGATAAATGCAGTGAGAAATTGAGCGAGGATCAAAGCACATGTGCACTGCCACTTTCTGATGCTGAGAATGCATACATGGATAATATGCAAAATGCCTCTCTGATGAAGTGTTCTTTGAAATTAAGCAACATTGATGTGTTGAAGCATGAAGAGTCTAACATAAGTGTACAGGGATCTACTAAGCATAATGATGAAACAGAAGATCCAAGGCTAGAACAAGATCTCAGTACTGCTGAAATTGAACCCAAAAATGAAATAGTTAGAGCTGAGTTAAGCAGAGAGAACCCTGATGTTAATACCGAGATACGCCGATGCAGTGATGAACCGATAGAACCTTCTAGAAGAGCTATTGACTTGATTTCCCCATTTGGGAAATCAAACAAGCAAGCAAGTGAATTTTCTGGCAGATCATGCAAACAAGCAAGTGAAGCATCTGAGGAATGGCAAAGATTAAACCACTCAAACACTTCTGCCTTTTCCCGGTATGATAGTAGTAAGATGTTGCGGCCACTTTTTCAAAACCCCAATTGGAATTCTAATAAATCTCATGAATTATCTGAAGTAACTGCTGGTAATTGTTTTCAGTATGGTGGCTTAATTAAAACGGAGAATATGACTACTGCAGTAATGACTCAGTATGGACAACTTGGACCAACATTATTTAACAGTGGACCCTTAGCTGATAATGTTTTCCATCACACGTGGACTCCTAAATCAAATTGCCAAAGAGAGAGCTCTCCCTTTCCCTCAAGTTCCTCCTCCCAATCCAATCCCGAAAGTCACAATTCAGACCATCATCATAATTGCTCTTATGATGTTAACTACAGTTTTCGTAATCAGGATGTTGCTGAAAAAATTGATTTGGATCATGTAGTGCATGATTCTCCTACAGCTGGTCAGGGTTTTGGCAATGAATTATGTCATGCTTCAAATGATATTAATGGTAGTGGCAATGTTGGAAGGGCTGCTTCAAATGTGGTTACCAAGAACTCGAGAAGTTCTAGTGATGGTAGGCGCTACAAACATGATTTTTATGATTATGATGATGAATTTAGATCGAGTGATTCTCAAAGATCCAGTCGAAGAGAAGCAGCTCTAACAAGGTTCCGATTAAAACGAAAAGAGAGATGCTTTGGGAAAAAGGTTCGATATGAGAGCCGGAAAAAACTGGCAGAACAACGCCTTAGGGTGAATGGGCAGTTCGTACGAAAAGTACACAATGATGATCATCCAAACGCAGATGCTAGTGGTGGTGATCAATGA 1860 0.3871 MNETEVKEEKMNDHDNVDDQSKEVFRWEMLLPKINVTVLLVESDRATRRLITAILKNCSYIVIAVSNGLKAWETLKTKATDIDLILTEMELPAISGLELLSKIMEHEICKNIPVIMMSSHDSRITAMNCMFKGAADFLIKPVRKNELTNLWQHVWRKLVINRPLQNIRSAQKNLKIATEDNFAGNQSTDSDSVASSQKNDKCSEKLSEDQSTCALPLSDAENAYMDNMQNASLMKCSLKLSNIDVLKHEESNISVQGSTKHNDETEDPRLEQDLSTAEIEPKNEIVRAELSRENPDVNTEIRRCSDEPIEPSRRAIDLISPFGKSNKQASEFSGRSCKQASEASEEWQRLNHSNTSAFSRYDSSKMLRPLFQNPNWNSNKSHELSEVTAGNCFQYGGLIKTENMTTAVMTQYGQLGPTLFNSGPLADNVFHHTWTPKSNCQRESSPFPSSSSSQSNPESHNSDHHHNCSYDVNYSFRNQDVAEKIDLDHVVHDSPTAGQGFGNELCHASNDINGSGNVGRAASNVVTKNSRSSSDGRRYKHDFYDYDDEFRSSDSQRSSRREAALTRFRLKRKERCFGKKVRYESRKKLAEQRLRVNGQFVRKVHNDDHPNADASGGDQ 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00910 619 MobiDBLite consensus disorder prediction 437 466 - -
Trre16g00910 619 Pfam CCT motif 561 603 IPR010402 GO:0005515
Trre16g00910 619 SMART REC_2 36 151 IPR001789 GO:0000160
Trre16g00910 619 MobiDBLite consensus disorder prediction 182 211 - -
Trre16g00910 619 ProSiteProfiles CCT domain profile. 561 603 IPR010402 GO:0005515
Trre16g00910 619 MobiDBLite consensus disorder prediction 437 458 - -
Trre16g00910 619 Gene3D - 36 297 - -
Trre16g00910 619 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 355 IPR045279 GO:0009736
Trre16g00910 619 MobiDBLite consensus disorder prediction 515 532 - -
Trre16g00910 619 SUPERFAMILY CheY-like 36 168 IPR011006 -
Trre16g00910 619 MobiDBLite consensus disorder prediction 515 539 - -
Trre16g00910 619 ProSiteProfiles Response regulatory domain profile. 37 155 IPR001789 GO:0000160
Trre16g00910 619 MobiDBLite consensus disorder prediction 182 200 - -
Trre16g00910 619 Pfam Response regulator receiver domain 38 149 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00910 Trre-Chr16 7062097 7066554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00910 556 610 Response Regulator Gene Family AT5G24470 69.091 2.38e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre16g00910 Response_reg 6.7e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00910 K12130 - gmx:100791698 533.487