Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00909 ATGGATGAAGAAATTGAATTAAACGGAATAATGAATGAAACAGAGGTGAAAGAAGAGAAGATGAACGATCATGACAATGTTGATGATCAATCTAAAGAGGTTTTTAGATGGGAAATGCTTCTACCAAAGATTAATGTTACTGTTCTGCTTGTTGAATCTGATCGTGCTACTCGAAGATTAATTACTGCAATTCTCAAGAATTGCAGTTACATAGTTATTGCAGTTTCTAATGGATTAAAGGCATGGGAGACATTGAAGACGAAGGCAACTGACATTGATCTCATATTAACAGAAATGGAGTTGCCTGCAATATCTGGATTAGAACTCCTTTCTAAAATTATGGAGCATGAAATTTGCAAAAACATTCCCGTTATAATGATGTCTTCTCACGATTCACGTATCACGGCAATGAATTGCATGTTTAAAGGTGCAGCTGATTTTCTTATCAAACCTGTTCGGAAGAATGAGCTTACGAACTTATGGCAGCATGTATGGAGAAAGCTTGTTATTAACAGGCCTCTCCAAAATATAAGATCTGCTCAAAAGAATCTTAAAATTGCCACAGAAGACAATTTTGCCGGCAATCAATCAACTGATTCTGATTCTGTGGCTTCCTCACAGAAAAATGATAAATGCAGTGAGAAATTGAGCGAGGATCAAAGCACATGTGCACTGCCACTTTCTGATGCTGAGAATGCATACATGGATAATATGCAAAATGCCTCTCTGATGAAGTGTTCTTTGAAATTAAGCAACATTGATGTGTTGAAGCATGAAGAGTCTAACATAAGTGTACAGGGATCTACTAAGCATAATGATGAAACAGAAGAGGCTGTATGGTGTAACAAAACTTTTAAATTGACAGATCCAAGGCTAGAACAAGATCTCAGTACTGCTGAAATTGAACCCAAAAATGAAATAGTTAGAGCTGAGTTAAGCAGAGAGAACCCTGATGTTAATACCGAGATACGCCGATGCAGTGATGAACCGATAGAACCTTCTAGAAGAGCTATTGACTTGATTTCCCCATTTGGGAAATCAAACAAGCAAGCAAGTGAATTTTCTGGCAGATCATGCAAACAAGCAAGTGAAGCATCTGAGGAATGGCAAAGATTAAACCACTCAAACACTTCTGCCTTTTCCCGGTATGATAGTAGTAAGATGTTGCGGCCACTTTTTCAAAACCCCAATTGGAATTCTAATAAATCTCATGAATTATCTGAAGTAACTGCTGGTAATTGTTTTCAGTATGGTGGCTTAATTAAAACGGAGAATATGACTACTGCAGTAATGACTCAGTATGGACAACTTGGACCAACATTATTTAACAGTGGACCCTTAGCTGATAATGTTTTCCATCACACGTGGACTCCTAAATCAAATTGCCAAAGAGAGAGCTCTCCCTTTCCCTCAAGTTCCTCCTCCCAATCCAATCCCGAAAGTCACAATTCAGACCATCATCATAATTGCTCTTATGATGTTAACTACAGTTTTCGTAATCAGGATGTTGCTGAAAAAATTGATTTGGATCATGTAGTGCATGATTCTCCTACAGCTGGTCAGGGTTTTGGCAATGAATTATGTCATGCTTCAAATGATATTAATGGTAGTGGCAATGTTGGAAGGGCTGCTTCAAATGTGGTTACCAAGAACTCGAGAAGTTCTAGTGATGGTAGGCGCTACAAACATGATTTTTATGATTATGATGATGAATTTAGATCGAGTGATTCTCAAAGATCCAGTCGAAGAGAAGCAGCTCTAACAAGGTTCCGATTAAAACGAAAAGAGAGATGCTTTGGGAAAAAGGTTCGATATGAGAGCCGGAAAAAACTGGCAGAACAACGCCTTAGGGTGAATGGGCAGTTCGTACGAAAAGTACACAATGATGATCATCCAAACGCAGATGCTAGTGGTGGTGATCAATGA 1926 0.3842 MDEEIELNGIMNETEVKEEKMNDHDNVDDQSKEVFRWEMLLPKINVTVLLVESDRATRRLITAILKNCSYIVIAVSNGLKAWETLKTKATDIDLILTEMELPAISGLELLSKIMEHEICKNIPVIMMSSHDSRITAMNCMFKGAADFLIKPVRKNELTNLWQHVWRKLVINRPLQNIRSAQKNLKIATEDNFAGNQSTDSDSVASSQKNDKCSEKLSEDQSTCALPLSDAENAYMDNMQNASLMKCSLKLSNIDVLKHEESNISVQGSTKHNDETEEAVWCNKTFKLTDPRLEQDLSTAEIEPKNEIVRAELSRENPDVNTEIRRCSDEPIEPSRRAIDLISPFGKSNKQASEFSGRSCKQASEASEEWQRLNHSNTSAFSRYDSSKMLRPLFQNPNWNSNKSHELSEVTAGNCFQYGGLIKTENMTTAVMTQYGQLGPTLFNSGPLADNVFHHTWTPKSNCQRESSPFPSSSSSQSNPESHNSDHHHNCSYDVNYSFRNQDVAEKIDLDHVVHDSPTAGQGFGNELCHASNDINGSGNVGRAASNVVTKNSRSSSDGRRYKHDFYDYDDEFRSSDSQRSSRREAALTRFRLKRKERCFGKKVRYESRKKLAEQRLRVNGQFVRKVHNDDHPNADASGGDQ 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00909 641 MobiDBLite consensus disorder prediction 537 554 - -
Trre16g00909 641 MobiDBLite consensus disorder prediction 459 480 - -
Trre16g00909 641 Gene3D - 46 316 - -
Trre16g00909 641 MobiDBLite consensus disorder prediction 537 561 - -
Trre16g00909 641 MobiDBLite consensus disorder prediction 195 215 - -
Trre16g00909 641 ProSiteProfiles CCT domain profile. 583 625 IPR010402 GO:0005515
Trre16g00909 641 PANTHER TWO-COMPONENT RESPONSE REGULATOR 47 358 IPR045279 GO:0009736
Trre16g00909 641 Pfam CCT motif 583 625 IPR010402 GO:0005515
Trre16g00909 641 MobiDBLite consensus disorder prediction 195 210 - -
Trre16g00909 641 Pfam Response regulator receiver domain 48 159 IPR001789 GO:0000160
Trre16g00909 641 SUPERFAMILY CheY-like 46 178 IPR011006 -
Trre16g00909 641 SMART REC_2 46 161 IPR001789 GO:0000160
Trre16g00909 641 MobiDBLite consensus disorder prediction 622 641 - -
Trre16g00909 641 ProSiteProfiles Response regulatory domain profile. 47 165 IPR001789 GO:0000160
Trre16g00909 641 MobiDBLite consensus disorder prediction 459 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00909 Trre-Chr16 7062097 7066584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00909 578 632 Response Regulator Gene Family AT5G24470 69.091 2.77e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre16g00909 Response_reg 7e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00909 K12130 - gmx:100791698 547.74