Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00908 ATGGATGAAGAAATTGAATTAAACGGAATAATGAATGAAACAGAGGTGAAAGAAGAGAAGATGAACGATCATGACAATGTTGATGATCAATCTAAAGAGGTTTTTAGATGGGAAATGCTTCTACCAAAGATTAATGTTACTGTTCTGCTTGTTGAATCTGATCGTGCTACTCGAAGATTAATTACTGCAATTCTCAAGAATTGCAGTTACATAGTTATTGCAGTTTCTAATGGATTAAAGGCATGGGAGACATTGAAGACGAAGGCAACTGACATTGATCTCATATTAACAGAAATGGAGTTGCCTGCAATATCTGGATTAGAACTCCTTTCTAAAATTATGGAGCATGAAATTTGCAAAAACATTCCCGTTATAATGATGTCTTCTCACGATTCACGTATCACGGCAATGAATTGCATGTTTAAAGGTGCAGCTGATTTTCTTATCAAACCTGTTCGGAAGAATGAGCTTACGAACTTATGGCAGCATGTATGGAGAAAGCTTGTTATTAACAGGCCTCTCCAAAATATAAGATCTGCTCAAAAGAATCTTAAAATTGCCACAGAAGACAATTTTGCCGGCAATCAATCAACTGATTCTGATTCTGTGGCTTCCTCACAGAAAAATGATAAATGCAGTGAGAAATTGAGCGAGGATCAAAGCACATGTGCACTGCCACTTTCTGATGCTGAGAATGCATACATGGATAATATGCAAAATGCCTCTCTGATGAAGTGTTCTTTGAAATTAAGCAACATTGATGTGTTGAAGCATGAAGAGTCTAACATAAGTGTACAGGGATCTACTAAGCATAATGATGAAACAGAAGATCCAAGGCTAGAACAAGATCTCAGTACTGCTGAAATTGAACCCAAAAATGAAATAGTTAGAGCTGAGTTAAGCAGAGAGAACCCTGATGTTAATACCGAGATACGCCGATGCAGTGATGAACCGATAGAACCTTCTAGAAGAGCTATTGACTTGATTTCCCCATTTGGGAAATCAAACAAGCAAGCAAGTGAATTTTCTGGCAGATCATGCAAACAAGCAAGTGAAGCATCTGAGGAATGGCAAAGATTAAACCACTCAAACACTTCTGCCTTTTCCCGGTATGATAGTAGTAAGATGTTGCGGCCACTTTTTCAAAACCCCAATTGGAATTCTAATAAATCTCATGAATTATCTGAAGTAACTGCTGGTAATTGTTTTCAGTATGGTGGCTTAATTAAAACGGAGAATATGACTACTGCAGTAATGACTCAGTATGGACAACTTGGACCAACATTATTTAACAGTGGACCCTTAGCTGATAATGTTTTCCATCACACGTGGACTCCTAAATCAAATTGCCAAAGAGAGAGCTCTCCCTTTCCCTCAAGTTCCTCCTCCCAATCCAATCCCGAAAGTCACAATTCAGACCATCATCATAATTGCTCTTATGATGTTAACTACAGTTTTCGTAATCAGGATGTTGCTGAAAAAATTGATTTGGATCATGTAGTGCATGATTCTCCTACAGCTGGTCAGGGTTTTGGCAATGAATTATGTCATGCTTCAAATGATATTAATGGTAGTGGCAATGTTGGAAGGGCTGCTTCAAATGTGGTTACCAAGAACTCGAGAAGTTCTAGTGATGGTAGGCGCTACAAACATGATTTTTATGATTATGATGATGAATTTAGATCGAGTGATTCTCAAAGATCCAGTCGAAGAGAAGCAGCTCTAACAAGGTTCCGATTAAAACGAAAAGAGAGATGCTTTGGGAAAAAGGTTCGATATGAGAGCCGGAAAAAACTGGCAGAACAACGCCTTAGGGTGAATGGGCAGTTCGTACGAAAAGTACACAATGATGATCATCCAAACGCAGATGCTAGTGGTGGTGATCAATGA 1890 0.3852 MDEEIELNGIMNETEVKEEKMNDHDNVDDQSKEVFRWEMLLPKINVTVLLVESDRATRRLITAILKNCSYIVIAVSNGLKAWETLKTKATDIDLILTEMELPAISGLELLSKIMEHEICKNIPVIMMSSHDSRITAMNCMFKGAADFLIKPVRKNELTNLWQHVWRKLVINRPLQNIRSAQKNLKIATEDNFAGNQSTDSDSVASSQKNDKCSEKLSEDQSTCALPLSDAENAYMDNMQNASLMKCSLKLSNIDVLKHEESNISVQGSTKHNDETEDPRLEQDLSTAEIEPKNEIVRAELSRENPDVNTEIRRCSDEPIEPSRRAIDLISPFGKSNKQASEFSGRSCKQASEASEEWQRLNHSNTSAFSRYDSSKMLRPLFQNPNWNSNKSHELSEVTAGNCFQYGGLIKTENMTTAVMTQYGQLGPTLFNSGPLADNVFHHTWTPKSNCQRESSPFPSSSSSQSNPESHNSDHHHNCSYDVNYSFRNQDVAEKIDLDHVVHDSPTAGQGFGNELCHASNDINGSGNVGRAASNVVTKNSRSSSDGRRYKHDFYDYDDEFRSSDSQRSSRREAALTRFRLKRKERCFGKKVRYESRKKLAEQRLRVNGQFVRKVHNDDHPNADASGGDQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00908 629 MobiDBLite consensus disorder prediction 447 468 - -
Trre16g00908 629 ProSiteProfiles CCT domain profile. 571 613 IPR010402 GO:0005515
Trre16g00908 629 MobiDBLite consensus disorder prediction 525 542 - -
Trre16g00908 629 MobiDBLite consensus disorder prediction 525 549 - -
Trre16g00908 629 Pfam Response regulator receiver domain 48 159 IPR001789 GO:0000160
Trre16g00908 629 Pfam CCT motif 571 613 IPR010402 GO:0005515
Trre16g00908 629 Gene3D - 46 306 - -
Trre16g00908 629 MobiDBLite consensus disorder prediction 192 210 - -
Trre16g00908 629 SMART REC_2 46 161 IPR001789 GO:0000160
Trre16g00908 629 SUPERFAMILY CheY-like 46 178 IPR011006 -
Trre16g00908 629 MobiDBLite consensus disorder prediction 447 476 - -
Trre16g00908 629 ProSiteProfiles Response regulatory domain profile. 47 165 IPR001789 GO:0000160
Trre16g00908 629 MobiDBLite consensus disorder prediction 192 221 - -
Trre16g00908 629 PANTHER TWO-COMPONENT RESPONSE REGULATOR 47 363 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00908 Trre-Chr16 7062097 7066584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00908 566 620 Response Regulator Gene Family AT5G24470 69.091 2.44e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre16g00908 Response_reg 6.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00908 K12130 - gmx:100791698 533.487