Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00906 ATGAATAAACCTAAACAAAACCAGAGAGATTCAGAATCACAGAAGCCAGGAAAGATTGGAAAGACAGATCACCCTGCATTGAAAATGGATGCGCACAGTGGAGATCTTCCTGATGCGGGAAGGAAGATTTGTGGGGAAGCACCATGTGGATTCTCAGATGCCGGATCCATCTCTGTGGATTCTAAAGAACGTTCAACATCTATGCGAAAGCTTTTGGTGGCAGTGATCCTTTGTGTTATTTTCATGACTGTTGAATTGGTCGGTGGCAAGGATCTTAGAAACGTACGATACTACGAGTCAGATCGCGATCTTGACTACCTTGGCATCAAAGCAAACAGTCTTGCAATATTGACCGATGCAGCACATTTGCTTTCCGATGTTGCAGCATTTGCCATCTCCTTGTTTTCGTTATGGGCTGCAGGATGGGAAGCTACTCCTCGTCAGTCGTACGGATTTTACAGAATAGAGATTCTCGGTGCTTTGGTTTCTATCCAATTAATATGGCTGCTCACTGGGATTATTGTATATCAAGCCATTGATAGACTTGTTACCGGTTCTCAAGAAGTTGATGGTTTTCTAATGTTTCTAGTTGCTGCATTTGGTCTCGTGGTTAACATCATTATGGCTGTGTTATTAGGTCATGATCATGGTCATGGTCATGGCCATGGCCATGACCACGGACACGGTCATCATGGTCACAGCCACGGACTTACAGTTTCTACTCATGATCTTACAAAAGATGAGCACCACCATCATACTCATGATCATGGCCACAGCACTCACCATCATGATGAAAACCACTCAAAAGATGCACACCATCACGGCCACGAAGGTGTTACCGAACCACTTCTCGGTGAATCAAAAGACAAGTCAAAGAAGAAGCGGAACATAAACGTGCAAGGCGCTTACCTCCACGTACTCGGCGACTCTATCCAGAGTGTTGGAGTAATGATTGGTGGAGCAGTCATATGGTATAAGCCTGAATGGAAAATAGTTGATTTAATTTGCACTCTTTTCTTTTCGTTAATCGTTTTGGGAACAACTATCAACATGCTGCGAAACATTTTAGAAGTTCTGATGGAAAGCACACCTCGCGAGATTGATGCTACTCAGCTTGAAAGCGGCATATTAGAAATGGAAGAAGTAGTAGCTGTTCATGAGCTGCACATTTGGGCCATTACAGTTGGTAAGATTTTGCTAGCATGTCATGTTAAAATCAACCGCGATGCCGATGCTGACATGGTGTTGGACAAAGTTGTTGACTACATCAAAAGGGTTTATAACATCAGTCATGTAACTATACAAATCGAGCGTTAG 1317 0.432 MNKPKQNQRDSESQKPGKIGKTDHPALKMDAHSGDLPDAGRKICGEAPCGFSDAGSISVDSKERSTSMRKLLVAVILCVIFMTVELVGGKDLRNVRYYESDRDLDYLGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFYRIEILGALVSIQLIWLLTGIIVYQAIDRLVTGSQEVDGFLMFLVAAFGLVVNIIMAVLLGHDHGHGHGHGHDHGHGHHGHSHGLTVSTHDLTKDEHHHHTHDHGHSTHHHDENHSKDAHHHGHEGVTEPLLGESKDKSKKKRNINVQGAYLHVLGDSIQSVGVMIGGAVIWYKPEWKIVDLICTLFFSLIVLGTTINMLRNILEVLMESTPREIDATQLESGILEMEEVVAVHELHIWAITVGKILLACHVKINRDADADMVLDKVVDYIKRVYNISHVTIQIER 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00906 438 Gene3D Cation efflux protein transmembrane domain 106 359 IPR027469 -
Trre16g00906 438 MobiDBLite consensus disorder prediction 218 292 - -
Trre16g00906 438 Pfam Cation efflux family 107 360 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre16g00906 438 NCBIfam cation diffusion facilitator family transporter 107 438 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre16g00906 438 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 108 438 - -
Trre16g00906 438 MobiDBLite consensus disorder prediction 1 33 - -
Trre16g00906 438 SUPERFAMILY Cation efflux protein transmembrane domain-like 107 361 IPR027469 -
Trre16g00906 438 MobiDBLite consensus disorder prediction 236 292 - -
Trre16g00906 438 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 366 437 IPR036837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00906 Trre-Chr16 7046846 7050613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00906 30 438 Inorganic Solute Cotransporters AT3G58810 65.610 2.36e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00906 K14689 - gmx:100794876 570.466