Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00905 ATGGAGAGGCTTCAAGGACCCATCAATTCTTGTCTTTTTGGTGAAGTAAATTGTTTAGACCAAACATTACTTGATGGAGAAAATTTGAGATTTGAAGAGGAAGAACAATTTCTTATGTCAAGTTTAGAAGATAACATACCATTTCTTCAAATGCTTCAAAATGTTGAAACCCCACAATTTTTTCCTTTGAAAGAACCAAACTTTCAAACACTTTTAAGGTTACAACATATGAAAAAACCATGGGAAGATTCAACCTTTATTCCTAGAATGGATTCACAACAAGTTCAAACAACATTGGAATTTGAAAGCTGTGTAACACAAGATATATTAGAGATGCAATCACCAGTGAAATCAGAAAGTAATGAACTTCTTCAACACAAAGTTTCTGCTTCATGCATTGAAAAAATGAGCTATGAATGTAACCAAGAACAAAGAAAAATAGTACAATCTTGTTCTAAATCTCAACTTGGAACAACTAAGGAAAAGAGAAAGAGAAAAAGAACAAGACCAGTTAAGAATAAGGAAGATGTTGAGAGTCAAAGAATGACACACATTGCTGTTGAAAGGAATAGGAGACGCCAAATGAATGACCATCTCAGTGTTCTTAGGTCACTTATGCCTTCTTCATATATTCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATAGATTTTGTGAAAGAGTTAGAACAATTACTTCAATCTCTTGAAGCACAAAAAAGGATAAAAAAGAATGAAGAATTTGGTTCTTCATCATCATCATCACCAACTAGTTATGGAATGAAATTATCATCTTGTGAAGAAAATGAGGTAAAGGCAGAAAATAAATCAGAAGCAGCAGATATAAAAGTAACATTGATTCAAACTCATGTGAACTTGAAAATTGAGTGCAAGAAAAGACATGGCCAATTGATAAAGGTTATTGTTGCTTTGGAGAATCTTAGGCTATCTATTCTTCACCTTAACATCACATCCTTTGATTCTTCTGTACTCTACTCCCTCAATCTCAAGATTGAAGAAGATTGTAAGCTAGGCACAGCAAATGACATAGCTGAAGCAGTTCATAAAATATTCAGCTATATTAATGGAAGCTAG 1098 0.3352 MERLQGPINSCLFGEVNCLDQTLLDGENLRFEEEEQFLMSSLEDNIPFLQMLQNVETPQFFPLKEPNFQTLLRLQHMKKPWEDSTFIPRMDSQQVQTTLEFESCVTQDILEMQSPVKSESNELLQHKVSASCIEKMSYECNQEQRKIVQSCSKSQLGTTKEKRKRKRTRPVKNKEDVESQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRIKKNEEFGSSSSSSPTSYGMKLSSCEENEVKAENKSEAADIKVTLIQTHVNLKIECKKRHGQLIKVIVALENLRLSILHLNITSFDSSVLYSLNLKIEEDCKLGTANDIAEAVHKIFSYINGS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00905 365 PANTHER TRANSCRIPTION FACTOR FAMA 104 359 IPR044283 GO:0003700|GO:0010052
Trre16g00905 365 SMART finulus 185 236 IPR011598 GO:0046983
Trre16g00905 365 Gene3D - 170 247 IPR036638 GO:0046983
Trre16g00905 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 247 IPR036638 GO:0046983
Trre16g00905 365 Pfam Helix-loop-helix DNA-binding domain 180 231 IPR011598 GO:0046983
Trre16g00905 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 230 IPR011598 GO:0046983
Trre16g00905 365 FunFam Basic helix-loop-helix transcription factor 170 245 - -
Trre16g00905 365 Coils Coil 227 247 - -
Trre16g00905 365 CDD bHLH_AtFAMA_like 182 250 - -
Trre16g00905 365 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00905 Trre-Chr16 7034324 7037254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00905 32 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.220 9.29e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g00905 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00905 - - gmx:100789928 533.487