Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00896 ATGTATCAACAACTTAGGGAAGAGCAAGTAAAAGAAGGCAACAAATGTGTGACATGTGGGAATGGTGGGCCTGGAGCCACATTCCCAGAGAACAAATGCATTAAGTGTCTTCTTTTAAAGTACAAAACCATGGAGAAATTTGTCAAGCTACTTTCAACTCCGGTGGTTCATAACTATAAGACTGAGATCTGCATTAACTGGGAACAGCGTAGAGAATGTGAATATGGGGTTTGGTGTAAGTTTGCCCACGGGCACGCTGACCTTAGAGAACCTGGTTCTTTTCAGACCATGTGCGAGGCATATGGTATTGTTATACCACGTGCCTGA 327 0.4343 MYQQLREEQVKEGNKCVTCGNGGPGATFPENKCIKCLLLKYKTMEKFVKLLSTPVVHNYKTEICINWEQRRECEYGVWCKFAHGHADLREPGSFQTMCEAYGIVIPRA 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00896 108 FunFam zinc finger CCCH domain-containing protein 15-like 55 91 - -
Trre16g00896 108 ProSiteProfiles Zinc finger C3H1-type profile. 58 86 IPR000571 GO:0046872
Trre16g00896 108 SMART c3hfinal6 58 85 IPR000571 GO:0046872
Trre16g00896 108 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 84 IPR000571 GO:0046872
Trre16g00896 108 SUPERFAMILY CCCH zinc finger 56 89 IPR036855 GO:0046872
Trre16g00896 108 Gene3D - 55 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00896 Trre-Chr16 6921730 6922196 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g00896 zf-CCCH 5.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00896 - K18753 csin:114307036 49.2914