Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00895 ATGTCTCTTTCACAAGAAACCATTGAAAATGAAGCAAATCACCTTACACAAGGAGATATCCAAAATGAAGATGGCATTGTTTTTGCTTTAAACTTGATTTCTTCGGTCATGCTTCCATTGACCGTCCGGTCCGCGGTTGAGCTTGGCATCTTCGACATTTTAGCCAAAGAAGGAAAAGACGCCAAGCTCTCTGCAAACGATATTGCAGTTAAGATTGGATCGAAAAATCCTGAAGCACCCACAATGTTGAACCGTCTTTTGAGGTTATTGGCCAGTCACTCCATGTTATATTGCTCGCTTTCTGAAGACGAACAAGGGCATTCGTCTCCTCAGAGGCTCTATAGCCTCGCCCCTATTTCTAAGTATTTTGTGACGGATGTTGATGGTGTGTCGTTTGGACCAACATTAAACTTACCTTTGGACAAAGTTTTCTTGGGAAGCTGGACCGAAATGAAAGGAGCAATTTTGGAAGGAGGTATACCATTCAATAGGGTTTATGGCATGCATGCATTTGAATATCCAGTTGTGGACCCAAGGTTTAATGATGTTTTCAACAATGCTATGCTCAATACTACCACTATTGTCATGAAGAGGATTCTTGAGATCTATGAGGGTTTTAAGAACATCAATAAACTTGTGGATGTTGGGGGTGGTCTTGGGATCAATATCAAGTTAATTACTTCTAAATATCCTCATATACACGGTGTTAATTTTGACTTGCCACATGTCCTAGAACATGCACCTACCTATCCCGGTGTGACACATGTGGGAGGAGATATGTTTGAAAGTGTACCCGATGGAGATGTTATTTTTTTGAAGTGGATACTTCATGATTGGAGTGATGAACATTGCTTGAAGTTATTGAAGAATTGTCATAAAGCTATTCCAAATGATGGAAAAGTGATTGTTGTGGATTCAATTATCCCTACTTTTCCTGAGAGTACAATGGTAGCTAAGACTGGTTTTCAAGCTGACCTCATGATGATGGCTCAAAATCCAGGAGGCAAAGAGAGAACCAAAGATGAGTTCATGGAATTGGCATTAGGATCTGGATTTAGTGACATCAATTTTGCTTGCTATTTCTCTGGCTTTTGGGTTATGGAATTTATTAAGTAG 1116 0.3987 MSLSQETIENEANHLTQGDIQNEDGIVFALNLISSVMLPLTVRSAVELGIFDILAKEGKDAKLSANDIAVKIGSKNPEAPTMLNRLLRLLASHSMLYCSLSEDEQGHSSPQRLYSLAPISKYFVTDVDGVSFGPTLNLPLDKVFLGSWTEMKGAILEGGIPFNRVYGMHAFEYPVVDPRFNDVFNNAMLNTTTIVMKRILEIYEGFKNINKLVDVGGGLGINIKLITSKYPHIHGVNFDLPHVLEHAPTYPGVTHVGGDMFESVPDGDVIFLKWILHDWSDEHCLKLLKNCHKAIPNDGKVIVVDSIIPTFPESTMVAKTGFQADLMMMAQNPGGKERTKDEFMELALGSGFSDINFACYFSGFWVMEFIK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00895 371 Pfam Dimerisation domain 41 91 IPR012967 GO:0046983
Trre16g00895 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 371 IPR016461 GO:0008168
Trre16g00895 371 SUPERFAMILY "Winged helix" DNA-binding domain 23 126 IPR036390 -
Trre16g00895 371 Gene3D - 37 199 IPR036388 -
Trre16g00895 371 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
Trre16g00895 371 Gene3D Vaccinia Virus protein VP39 181 360 IPR029063 -
Trre16g00895 371 FunFam Caffeic acid O-methyltransferase 124 371 - -
Trre16g00895 371 PIRSF O-mtase 7 371 IPR016461 GO:0008168
Trre16g00895 371 PANTHER O-METHYLTRANSFERASE 32 352 IPR016461 GO:0008168
Trre16g00895 371 FunFam Caffeic acid 3-O-methyltransferase 7 123 - -
Trre16g00895 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 369 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00895 Trre-Chr16 6916922 6918763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00895 13 371 Monolignol Biosynthesis Gene Families AT5G54160 51.105 1.11e-135 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00895 K13066 - gmx:100789402 557.37