Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00893 ATGGATTTGGTAGGACCCACCATGACCAGATTGGTTGGGGATTACATATTGGGTCCTAGAATTGGGTCTGGTTCATTTGCAGTTGTGTGGCGTTCTCGTCATAGAAATTCAGGTTTGATTGTAGCAATTAAGGAAATTGATAAGACCCAATTGAGTCCTAAAGTTAGAGATAATCTTATCAAAGAAATTTCAATTCTTAGTACTATTCATCATCCTAATATCATTCAACTCTTTGAAGTAATCCAGACAAATGATAGGATTTACCTTGTTTTGGAGTATTGTGGTGGAGGGGACCTTTCTGCTTACATTAATCGGTATGGAAGAGTCTCTGAATCCGTTGCTCGACATTTCATGAGGCAATTGGGCGCCGGTTTGCAAGTGCTTCAAGAAAAGAACCTCATACATCGAGATTTAAAACCACAGAACTTACTGTTGGCAACTACATCAGCTACGCCACTTATGAAAATAGGGGATTTTGGTTTTGCAAGGTCTCTCACACCTCTGCAGTTGGCAGATACACTATGTGGTTCACCTTATTACATGGCACCTGAGATAATTCAGAGTCAGAAGTATGATGCCAAGGCTGATTTATGGAGTGTTGGGGCAATATTGTATCAGCTAGTTGTCGGAAAACCACCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAAAATATTTTGGCATCTACGGAACTGCATTTTCCACCAACGATTTTAAAAGCGCTACATCCAGATTGTGTGGATCTTTGCAGAAGCCTTTTACGTCGAAATCCAGATGAGAGATTAACATTCAAGGCATTCTTCGATCACAACTTCCTACAGGAGCACAGGTCCGACATGAATATTGAGCAGTTTCATTCACATCAATCAGAAACCTCAATGGTTAATCAAGCACATTTTGAGTATCATGCCGAGACTTTTGTAGATGATCCAGTGGAAGTCAGTTCAGCGGTCAATGAGAATGTTACAGGGTTGACTCCAACTATTGCACTCGATAACCCGGGAAAGTCCATTCATACTGATACTCATTTGTCAAACCAAGTTCAAGTTTCCCACTTAATGGAGTCCATTGAGAAAGGTTATGTCTTTATCAATTCTCATTTTGCATCATTGGAGGATTTCTCTGTCTACTTTGAAGCATCCATGCAAGAAAATGCCTCAAGCGCCGTTTCTATCTCCCCTTCAAAGCAAACTAAGGATCTTCCGTCTTCCTCCGCTGCCGGGTTAGACAATTTTAAAAGCAATGAACTTGAGGAATTTGTAGCCTTAAAGAAAGAGAGGGAATTTTCTCTACTGCACCCTTCAAACAGGTTAGAGTTGTTGCATCGGTATGTTCAAGTCCTTGGAGAACTTTCGCAAGAAAAGTACAATACAGGACTGTATCTAGAATCGCTTGCGGTTGAGTTAGTGGTTTTGGCTATATGGAAGAAAGCTCTAGACATTTGTAGCACTTGGTTACCCCCCATTTCTGAGGGTGAGTTGCCTCGAAGCAGTTCAGTTAACGAATCCATAATTGCCAGTGGAGACGCGAGCTTATCACAGACTACAGAACAGGAAATAAATTTTAGCGACCATCTTTCCGTCTCCTTGTGGGCCAAACGTGGATTCATTATTGCAGTTGATCATGCTGAGAAACTATCATGTCATATTCAAAACATGGATGGTGCAGTTGAGATGCCAGATGCAATGGAGATTATATTCCAAGAAGCACTCTTAATTGGGACAAATGGTGCTGTAGATGAGTATATGAATAATCAAGATAAGTCTGCTGCATCTTACTCAAAAGCAATGCTTCTACTTTCATTTATTGTGGGAGAAGCAGAAAACCTTCCACTGAATCCTCCATTTTCACTTCTTGCTGATGATCAGAAGCGAATCATACAATATATTCGCAACTTGCAGTTTCGCAAAAAGTCTTTGTCAGAATCCACTTCAAAGGAATGA 1944 0.4048 MDLVGPTMTRLVGDYILGPRIGSGSFAVVWRSRHRNSGLIVAIKEIDKTQLSPKVRDNLIKEISILSTIHHPNIIQLFEVIQTNDRIYLVLEYCGGGDLSAYINRYGRVSESVARHFMRQLGAGLQVLQEKNLIHRDLKPQNLLLATTSATPLMKIGDFGFARSLTPLQLADTLCGSPYYMAPEIIQSQKYDAKADLWSVGAILYQLVVGKPPFDGNSQLQLFQNILASTELHFPPTILKALHPDCVDLCRSLLRRNPDERLTFKAFFDHNFLQEHRSDMNIEQFHSHQSETSMVNQAHFEYHAETFVDDPVEVSSAVNENVTGLTPTIALDNPGKSIHTDTHLSNQVQVSHLMESIEKGYVFINSHFASLEDFSVYFEASMQENASSAVSISPSKQTKDLPSSSAAGLDNFKSNELEEFVALKKEREFSLLHPSNRLELLHRYVQVLGELSQEKYNTGLYLESLAVELVVLAIWKKALDICSTWLPPISEGELPRSSSVNESIIASGDASLSQTTEQEINFSDHLSVSLWAKRGFIIAVDHAEKLSCHIQNMDGAVEMPDAMEIIFQEALLIGTNGAVDEYMNNQDKSAASYSKAMLLLSFIVGEAENLPLNPPFSLLADDQKRIIQYIRNLQFRKKSLSESTSKE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00893 647 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00893 647 Gene3D Transferase(Phosphotransferase) domain 1 7 324 - -
Trre16g00893 647 CDD STKc_ATG1_ULK_like 21 272 - -
Trre16g00893 647 ProSiteProfiles Protein kinase domain profile. 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00893 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Trre16g00893 647 FunFam Non-specific serine/threonine protein kinase 4 95 - -
Trre16g00893 647 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Trre16g00893 647 SMART serkin_6 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00893 647 SUPERFAMILY Protein kinase-like (PK-like) 11 314 IPR011009 -
Trre16g00893 647 FunFam Serine/threonine-protein kinase ATG1 7 311 - -
Trre16g00893 647 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 10 518 IPR045269 GO:0004674|GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00893 Trre-Chr16 6897153 6901380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00893 7 287 CBL-interacting serine-threonine protein kinases AT4G14580 37.716 1.17e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Trre16g00893 Pkinase 1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00893 - K08269 tpra:123884297 1151.35