Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00892 ATGTTTAATGTTGTTGTCTTCATGACATCTTTTGTTACAATCATTTTTCAACTTCTTTTGGTTTTTCCTTTAACATCATCCTTCAAACAAATCCAAACAAAACTAGTTGAACCATCTTTACTTCAAAAAAATTCATGCAATGAAACATGTGGAAAACTTCATATTCCTTTTCCATTCTACATCAACAACACTTCATGTTCATCATTATCAAGTTCTTTTCACCTAACATGTTCAAATTCATCCACCCTTTTGATCAAAATAGGTTCACAAAACTATCCCATTTTGGAATTCTTTTCAGATGGTTTATTAGTAGACTTTCCCGGAACATCATCGTGTCGCCAATACAACGATTTAAATTCATTCGGCGAAAGGTTTTTCGATGGAAAAAACTACTTTGGTATATCAGTTGATAATGTTGTTGGTCTATATGATTGTGAAGATTCTTCACTTTGTAAAGCAGATTGTGAAACAGTTAATCTTCCTGGTTGTGATGGAAGTGTTGGTGGTGGTTCTCTTGGATGTTGTTATCCACTTTCTGATCATACTATATGGCATATTGGTGAAGGTTTTTCTGTCTTTTCAAAATTTGGATGCAGGGGATTTTCTAGTTGGACTGTTTTAAGAGGTTCTTATTCAGGTAAAAGAGGGGTAAAATTGGAATTTGGTATTCCTAGGAACTTATCTAAGGAGATTTGTGCTAAGAATGCTGATATGGTGAATGCTACATCAATTAAAAGTGGTGTAAGGTGTGTTTGTGAAGATGGATATGTTGGTGATGGTTTTGCTAATGGAACTGGATGCTTATTGTCATGTATCAAAGATGGAAAGGAAGCATATGGAAGTGACTGCTACATCAAAAGACATGATCAAAGAAAAATGGTCATCATCGCGGGAATCCTTTGTCCAATTCTTATTGTTGCATCATTAGTTGCACTATTCTATCTTCTAAAAAGAAAACAAAAGCCAGGAATGTTCGATTCCGAGCAAGCTTATTACCACAACATTTCATTCCGAAAAGCGTGTAGAACTCGACTTTTCAGTTACCATGAACTAGAAGAAGCTACCAATGGTTTTGAAGATAGTAGAAAACTCATGCAATGCAATACAAGCACAATTTTTGCTGGTGTTATTGGTGATGGATCACATGTAGCTATACACAAGTTATCAAAATGTGAGAATGATAAAGATATGATGCATGTTATGTCACAAATTGAAGTCTTATCTTCTATTGTACATAGAAATGTTGCATCAATCATTGGTTGTTGCATTGATTCTAACTACACTCCTTTAGTTGTTTATGAATATCCTGCAAATGGTACTTTGGAGGATCATTTACACAAAAACAAAGGACAAAAATGGCAAAAAAATGGTTTTTTAGATTGGTATAGAAGATTGAATATTGCAACAGAAATAGCTACTACTATTGCATTGTTACATTATGATAAATCTCCTCCAATATTTCATCATAATCTAAAGTCTAGTTGCATATTCCTAGATGATGATTTTTCGGTCAAGATTGCAGGATTTGGAATACTTAATTACGATAACAAGAATTGCGAAAATCGTGAACGCTTTCGCTTGTGCAAAAATGATGTCTATGACATAGGTGTGTTACTACTTGAGATTATCTATGGATCAAATCAAATGGACTCACCTACATTAGCCTTGAAGAAAATACGAGACGGAAAGATCGAAGAAATTGTTGATCCGCTTCTTAATTATCACGAACAACCGAGGACTTGTCAAGAACAGATACTTATCTTTGCTGATCTTGCAACAAGATGTTTGCTATTTAGTGGAGATGGAAAAATGGGAATGATTGATGTTGCTAGGGAATTGGTTCATTTGAGTAAAGATAGTGTTGATGGTGGAAATGTGAAAGGACTTGTTCTTGAAGAAACATTCTCAAATTCAAGTCTTCTTCAAATGATATCTTTGTCTCCTGATTCTATGAATGTTCCTTGA 1965 0.3425 MFNVVVFMTSFVTIIFQLLLVFPLTSSFKQIQTKLVEPSLLQKNSCNETCGKLHIPFPFYINNTSCSSLSSSFHLTCSNSSTLLIKIGSQNYPILEFFSDGLLVDFPGTSSCRQYNDLNSFGERFFDGKNYFGISVDNVVGLYDCEDSSLCKADCETVNLPGCDGSVGGGSLGCCYPLSDHTIWHIGEGFSVFSKFGCRGFSSWTVLRGSYSGKRGVKLEFGIPRNLSKEICAKNADMVNATSIKSGVRCVCEDGYVGDGFANGTGCLLSCIKDGKEAYGSDCYIKRHDQRKMVIIAGILCPILIVASLVALFYLLKRKQKPGMFDSEQAYYHNISFRKACRTRLFSYHELEEATNGFEDSRKLMQCNTSTIFAGVIGDGSHVAIHKLSKCENDKDMMHVMSQIEVLSSIVHRNVASIIGCCIDSNYTPLVVYEYPANGTLEDHLHKNKGQKWQKNGFLDWYRRLNIATEIATTIALLHYDKSPPIFHHNLKSSCIFLDDDFSVKIAGFGILNYDNKNCENRERFRLCKNDVYDIGVLLLEIIYGSNQMDSPTLALKKIRDGKIEEIVDPLLNYHEQPRTCQEQILIFADLATRCLLFSGDGKMGMIDVARELVHLSKDSVDGGNVKGLVLEETFSNSSLLQMISLSPDSMNVP 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00892 654 Gene3D Phosphorylase Kinase; domain 1 329 435 - -
Trre16g00892 654 ProSiteProfiles Protein kinase domain profile. 358 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00892 654 SUPERFAMILY Protein kinase-like (PK-like) 340 613 IPR011009 -
Trre16g00892 654 FunFam probably inactive receptor-like protein kinase At2g46850 330 435 - -
Trre16g00892 654 Pfam Wall-associated receptor kinase galacturonan-binding 46 97 IPR025287 GO:0030247
Trre16g00892 654 Pfam Protein tyrosine and serine/threonine kinase 371 516 IPR001245 GO:0004672|GO:0006468
Trre16g00892 654 Gene3D Transferase(Phosphotransferase) domain 1 437 523 - -
Trre16g00892 654 Gene3D Transferase(Phosphotransferase) domain 1 524 622 - -
Trre16g00892 654 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 41 616 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00892 Trre-Chr16 6888009 6890914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00892 16 616 Receptor kinase-like Gene Family AT2G23450 27.829 2.67e-53 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Trre16g00892 PK_Tyr_Ser-Thr 3.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00892 - - gmx:100810557 881.322