Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00890 ATGGAGTTGATGCAAGAAGTGAAAGACTATTCACATGAAGAATTAGAGGAAGAAGAAGATGAAGAAATCAACACAAGAACAAAAGTAGAAGACGAAAGTAGTAAGCAACAATTACAACACTGCCCTTTTTCTCCTTCACCTTCTAATTTCTCTTTATCTTCATCTTCACCTTCAACAACTCATCATCATCATCAAAATCAAAATCAAAATCAATGGCTAGGAATCAATCATTCTCCTGAGTCTCATAATTCATCATCTAGAGGATTAGGGTTCTTACACCAAGATGCTGCAACAACCTCAAATTTCACAAATCAAACAAATTTAAAACAAATAGATTTCATGGAATTGTCACTTGGTACAAACAAAGATCCTAGTTCTTCAAATACCAACAACCAACAAGAACAACAACAACAACAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGAAAACTAAACCGTTTAGTTATACCAAAACAACATGCTGAGAAATATTTTCCACTTGATTCAAACTCAAATGAAAAAGGTCTACTTCTAAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAATAGTAGTCAAAGCTATGTTATGACAAAAGGTTGGAGTCGTTTTGTTAAGGATAAAAAACTCGATGCCGGCGACATTGTTTCGTTTCAACGCGGTGTTGGCGAATTGTTTCGACATAGGTTGTTTATTGATTGGAAGAGAAGAACAAATCATCATAATCTTGATCCTTCTTCATCAACACTTTTTACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGTGGAGGTGCTAATAGTAGATTCTATTCTCTTCCTTATCCTTCTCCTCCACAAAGTTTACAACATCATCAGCAACAAAATCATCAACATCATCATCATGACCCTTTACAGAATCAAATGAGTTATAATTATCAAATGTATCCATTTCATCAACATGGTGGTGGAAATGTTGGAAATGTGAATCATCAATACAATTTTCATCATCATCAACAACATGATCCAAGTTCTGTCTTTTACATGAGATCATTAGCATCATCATCATCATCATCACCATCATCATTATCACCAATGGTTGATCAAGGAAGCTTAACAAGACATCAACAAGGAGTTGGAGGAGGAGGAAATGCTTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATCATCATCATTATCATCATCAACATCAACATCAACATCAACATGGTGGTTTTTCTAGTAGTGGAAATTTAACTACTACTACTACTACTACTAGTACTAGTACTATTAATGGTGCTGCAAAAAGGTTAAGATTATTTGGTGTGAACATGGAGTGTGGTTCTTCAACAAATCATGATTCAACTCCTTCTTCTTCTTCTACTTCAATTGTACCATCTCTTCAACATTTGAGACTACCTCATCATGAAGAAACACTATCAACAAGATTTGAAGAAGATAAGAGAAGAGAAGCTTCAATGATTTTTGGTTTAGACCCTTCTTTGCAATATCATAATTACCAACAACAATGA 1575 0.3403 MELMQEVKDYSHEELEEEEDEEINTRTKVEDESSKQQLQHCPFSPSPSNFSLSSSSPSTTHHHHQNQNQNQWLGINHSPESHNSSSRGLGFLHQDAATTSNFTNQTNLKQIDFMELSLGTNKDPSSSNTNNQQEQQQQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSNSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGVGELFRHRLFIDWKRRTNHHNLDPSSSTLFTPFFLPNQQQYSIRWGGGANSRFYSLPYPSPPQSLQHHQQQNHQHHHHDPLQNQMSYNYQMYPFHQHGGGNVGNVNHQYNFHHHQQHDPSSVFYMRSLASSSSSSPSSLSPMVDQGSLTRHQQGVGGGGNASNMIIDSVPVSHHHHYHHQHQHQHQHGGFSSSGNLTTTTTTTSTSTINGAAKRLRLFGVNMECGSSTNHDSTPSSSSTSIVPSLQHLRLPHHEETLSTRFEEDKRREASMIFGLDPSLQYHNYQQQ 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00890 524 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Trre16g00890 524 FunFam B3 domain-containing protein 142 263 - -
Trre16g00890 524 MobiDBLite consensus disorder prediction 460 482 - -
Trre16g00890 524 MobiDBLite consensus disorder prediction 118 139 - -
Trre16g00890 524 Gene3D - 142 260 IPR015300 -
Trre16g00890 524 Coils Coil 12 32 - -
Trre16g00890 524 ProSiteProfiles B3 DNA-binding domain profile. 149 249 IPR003340 GO:0003677
Trre16g00890 524 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 18 471 IPR044800 GO:0003700
Trre16g00890 524 MobiDBLite consensus disorder prediction 365 445 - -
Trre16g00890 524 SMART B3_2 149 254 IPR003340 GO:0003677
Trre16g00890 524 MobiDBLite consensus disorder prediction 365 396 - -
Trre16g00890 524 CDD B3_DNA 147 236 IPR003340 GO:0003677
Trre16g00890 524 MobiDBLite consensus disorder prediction 36 67 - -
Trre16g00890 524 MobiDBLite consensus disorder prediction 118 151 - -
Trre16g00890 524 SUPERFAMILY DNA-binding pseudobarrel domain 145 248 IPR015300 -
Trre16g00890 524 MobiDBLite consensus disorder prediction 294 317 - -
Trre16g00890 524 MobiDBLite consensus disorder prediction 423 445 - -
Trre16g00890 524 MobiDBLite consensus disorder prediction 460 485 - -
Trre16g00890 524 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00890 Trre-Chr16 6849839 6851413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00890 115 464 RAV Transcription Factor Family AT2G46870 41.880 2.10e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g00890 B3 4.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00890 K09287 - gmx:100781424 379.407