Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00889 ATGACAACTTCATACACCATTCTTGATTTTCTTCCTGTTGGATTCAGATTCAGACCAACAGATGAAGAGTTAGTTAACCACTACCTCAAAAACAAGTTACTTGGTAATGATTACATTGTAAACAATGTTATAGCTGAAGTTGATTTTTGTAAGTTTGAACCTTGGGAGTTAAAAGATGTTTCGATGATAAAATCCGATGACCGGGAATGGTTTTTCTTGTGTCCTTATGATTATAAGTATCCTAATAGTAAGAGGTTTAACAGGAAAACAAAGTGTGGTTTTTGGAAACCCACCGGCAGAGACAGGAACATTAAGATTAGGGGTACTAGTAAGATTAGTGGGATTAAGAAGACCCTTGTTTACTACCAAAATCATGTTCCTAATGATGTTAAGACCAATTGGATCATGCACGAGTACCATGATGTTACCTTTAAAGAAAATCAGAGGACTTTCATTTTATGTCGCTTAAAGGAGAAAGATGAAAATAAAGCCGAAGAGGAAACAGATACAATGATATGTGAAAAAGGGGAACCAAGTAGACACATGAGTTCCGACAATGAAAATCAAGAAACATTAGAAGGAATTTCAAATGTAAGTGGTACTTTGCCAAAAATAAATATGGAATCAACAATGTTCGAGGCACCTTATCAGGTAGAAAGATACTTACCTTTCTCAACACAACGTTCTTCAAATGAGCAGAACGTATCGATCACAAACTCGCAACTTCACGATGCTTATTTTGGAAATGTGAACATCAATACTCTTGACACATACAAATGGTAA 783 0.3538 MTTSYTILDFLPVGFRFRPTDEELVNHYLKNKLLGNDYIVNNVIAEVDFCKFEPWELKDVSMIKSDDREWFFLCPYDYKYPNSKRFNRKTKCGFWKPTGRDRNIKIRGTSKISGIKKTLVYYQNHVPNDVKTNWIMHEYHDVTFKENQRTFILCRLKEKDENKAEEETDTMICEKGEPSRHMSSDNENQETLEGISNVSGTLPKINMESTMFEAPYQVERYLPFSTQRSSNEQNVSITNSQLHDAYFGNVNINTLDTYKW 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00889 260 Gene3D NAC domain 20 165 IPR036093 GO:0003677|GO:0006355
Trre16g00889 260 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
Trre16g00889 260 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 177 - -
Trre16g00889 260 SUPERFAMILY NAC domain 7 158 IPR036093 GO:0003677|GO:0006355
Trre16g00889 260 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00889 Trre-Chr16 6821353 6822635 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00889 1 177 NAC Transcription Factor Family AT1G33060 50.270 3.22e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g00889 NAM 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00889 - - psat:127076164 329.331