Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00887 ATGACAACAACCCCTTTTCCGATTCTTATAAGTGATCCTGTTGGATTCAGATTCCGTCCCACAGATGAAGAGCTTGTAAGCCATTATCTCAAAAGCAAGTTGCTTGGTAATGATGACATTGCAAAGGGTGTTATAGCTGAAATTGATCTGTGCAAGTTTGAGCCTTGGGACTTACCTGCTGTTTCGATGATACAATCCGATGACCAACAATGGTTTTTCTTGTGTCCTCTTAATTACAAACATGCAAAGAGTAAAAAAATTAAGAGGGCAACACAATTTGGGTTTTGGAAAGCAACAGGGAAAGATAGAAACATTAAGATTTCGGGTACTAGTAAAGTTGTTGGAATTAAAAAGACTCTTGTTTATTACAAAGGTCGTGTTGCTGGTGATGCTAAGAAGACCAATTGGGTTTGTCATGAGTACCATGATGTTACCTTTGAAGATAACCAGAGGAATTTTGTTTTATGTCGCTTGAAGAAGAAAGATGAGATTGAGACAAATGCTGAAGAAAAAGGTGAAATAATGATATGTGGTGAAGGGGAGCCAAGTAGAGACATGAGTTGCAACCAAAATTTTGAAGGGGACTTTCCTTTCTCAACACAACAATCTTCTATATCTAAAAATGATCAGATGCTTTCAACCCCAAACTTGCAACATCACGATGCCTATTTTGGAAATTTCAACATAGTTGATCAAACTTGGGAGTACATGTCAGAAGATGAATTTTGCGCAGTTATTACTGCCACTATCGCAACCGTACCGTGCTCCACAGATCGGCGTCGTAGGTGTTACCTCTGTCGTGCCGTCGCTACTGCCTTCGCTGGTGCATTCGGAGCAAGAATTTCAAATTAA 852 0.3955 MTTTPFPILISDPVGFRFRPTDEELVSHYLKSKLLGNDDIAKGVIAEIDLCKFEPWDLPAVSMIQSDDQQWFFLCPLNYKHAKSKKIKRATQFGFWKATGKDRNIKISGTSKVVGIKKTLVYYKGRVAGDAKKTNWVCHEYHDVTFEDNQRNFVLCRLKKKDEIETNAEEKGEIMICGEGEPSRDMSCNQNFEGDFPFSTQQSSISKNDQMLSTPNLQHHDAYFGNFNIVDQTWEYMSEDEFCAVITATIATVPCSTDRRRRCYLCRAVATAFAGAFGARISN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00887 283 Gene3D NAC domain 21 165 IPR036093 GO:0003677|GO:0006355
Trre16g00887 283 SUPERFAMILY NAC domain 9 161 IPR036093 GO:0003677|GO:0006355
Trre16g00887 283 Pfam No apical meristem (NAM) protein 13 142 IPR003441 GO:0003677|GO:0006355
Trre16g00887 283 ProSiteProfiles NAC domain profile. 12 161 IPR003441 GO:0003677|GO:0006355
Trre16g00887 283 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 13 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00887 Trre-Chr16 6807673 6811356 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00887 9 183 NAC Transcription Factor Family AT5G24590 48.333 1.93e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g00887 NAM 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00887 - - psat:127076164 284.263