Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00884 ATGACAACTTCATACCCCATTCTTGATTTTCTTCCCGTAGGATTCAGATTCAGACCAACAGATGAAGAACTAATTAGCCATTATCTCAAAAACAAGTTACTTGGTAATGATTCTTTTGTAAACAATGTTATAGCTGAAGTTGATGTATGCAAGTTTGAACCTTGGGAATTACCAGCTGTTTCAGTGATAAAATCAGATGACCCAGAATGGTTTTTCTTGTGTCCTTGTGATTACAAGTATTCTAAGAGTAGGAGTAAAAGGTTTAACAGGGCAACAAACTGTGGTTTCTGGAAAGCTACTGGAAATGATCGGAAGATTAAGATTAGGGGTACTAATAATGTTATTGGGATCAAGAAAACTCTTGTTTACCATAATGGTCGTGTTCCTGGTGTTAAGAGCAATTGGGTAATTCATGAATATCATGATGTTACCATGGAAGAAAATAAGAGGACTTTTGTTTTAAGTCGCTTGATGAGGAAAGCTGAGACAAAAACTGAAGAGGAAGCTGATATAATGATATGTGATGAAGGGGAGCCAAGTAGACACATGAGTTCCGACTATGAAAATCAAGAAACGGTTGAAGGAATTCCAGATGTAATAAGTGGTACTTTACCAGCAATAAATATGGAATCAATATTTCAGGCACCTCATCAGGCAGAAAATTACTATCCTTTCTCAACACAACAATCTTCAATCTCGGAAAATGAGCCGGAAGTATCGATCCCAAACTCGCAACTTCACAATGCCTATTTTAGAAATGTAAACACTGTTGATCAAAGTCCGTTCCAAACTCCTGAAGAGGAAGATACATTCGTCAAGTCGATGCTTACTGACGGAGAATTTGTTACTAGTGAAAATAGAAGACATGCTTTTGTCAACAGTCCGGTCCGGTCTGAGTCATTGAGAATGGCTTACTATGAAAGCAGTGACACAGATGCCGAAGTAGTCTCTACGCCGTATGGCAGTCTTATGGATACTTCAACGGCATCTCTTGACTATCTTAGTCCAGGCGAATACTATGCATCAAAAATGTTGAAATCAACGCATTTTAATGTTTATGGAAGCACATATTTTCCATCTTTTAACAATGGTGAAAGCGACAACAAAAACGAGAGTACATTCCGAGATGATTTCGGCGGAGTGGAGGCATCCTCTTGTGACTCAACTCCAAATAAATTTTAA 1182 0.3807 MTTSYPILDFLPVGFRFRPTDEELISHYLKNKLLGNDSFVNNVIAEVDVCKFEPWELPAVSVIKSDDPEWFFLCPCDYKYSKSRSKRFNRATNCGFWKATGNDRKIKIRGTNNVIGIKKTLVYHNGRVPGVKSNWVIHEYHDVTMEENKRTFVLSRLMRKAETKTEEEADIMICDEGEPSRHMSSDYENQETVEGIPDVISGTLPAINMESIFQAPHQAENYYPFSTQQSSISENEPEVSIPNSQLHNAYFRNVNTVDQSPFQTPEEEDTFVKSMLTDGEFVTSENRRHAFVNSPVRSESLRMAYYESSDTDAEVVSTPYGSLMDTSTASLDYLSPGEYYASKMLKSTHFNVYGSTYFPSFNNGESDNKNESTFRDDFGGVEASSCDSTPNKF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00884 393 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 243 - -
Trre16g00884 393 Gene3D NAC domain 20 174 IPR036093 GO:0003677|GO:0006355
Trre16g00884 393 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
Trre16g00884 393 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Trre16g00884 393 MobiDBLite consensus disorder prediction 361 393 - -
Trre16g00884 393 Pfam No apical meristem (NAM) protein 12 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00884 Trre-Chr16 6788400 6790771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00884 8 168 NAC Transcription Factor Family AT3G49530 51.497 1.33e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g00884 NAM 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00884 - - psat:127076164 504.212