Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00873 ATGACAAAGATTCTCTCTTGTCTTTCTCTTCAAAAATCTCATCTTTTTCACCTCTTAATTGGTCTTCTTCATCTGATTGTTGCAATTGGGAAGATTCTTGCTGCAAATGGGAATTTGATTTCTTTCAATGTTAGTAACAACAGTTTCACAGGTCATATTCCAATTTCAAGCTTTTGTATTAATAATTCTGCTATAAAATTCTTGGATTTTTCATCCAATGATTTTGTTGGTGTTATTGATACTGGTTTAGGAGCATGTTCTAAGCTTGAGAGGTTTAGGGCAGGTTTCAATTTTCTAACAGGGAATATACCAGTTGATATTTATGATGCTGTTTCACTCACAGAAATATCATTGCCACTTAATAGAATTAATGGAACAATTGGTGATGGAATTGTTAACCTTACAAATCTCACAGTTTTGGAGCTTTATTCCAATAATTTAACAGGTTCTATTCCTAAGGAAATTGGTAAACTTTCCAAATTGGAAAGGTTACTTCTTCATGTCAACAATTTGACAGGTCCAATTCCATCATCTTTGATGAATTGTCACAATCTTGTTGTGTTGAATTTAAGGGTCAATGATTTGGAAGGAAATCTTTCGGCGTTTAATTTCTCAGGACTTGTTAGACTTGTTACGCTTGATCTTGGCAACAATAGGTTCAGCGGTGTTTTACCGCCGAGCCTTTATGATTGTAAGTCACTTGCTGCATTAAGGCTTGCATCTAATCAGCTTGAGGGACAGGTTTCATCTGAGATACTTGGACTCGAGTCTCTTTCGTTCTTATCGATTTCTAAAAACATGTTGAAGAATATCACTGGTGCTCTAAGAATACTCACTGGCCTCAAGAAGCTTAGTACCCTTATGCTCTCCAAGAATTTTTACAATGAAATGTTACCGAACGATGCAAACGTGATAGGCCCTGATGGATTCCAAAAGATCCAAGTTTTAGGATTAGGGGGTTGTAATTTCACAGGTCAAATACCAAGTTGGCTTAAAAACCTGAAGAAGCTTGAGGCCGTGGACCTGTCCTATAATCTATTAAGTGGTTCGATTCCTCCTTGGTTAGGTACACTTTCTGAACTTTTCTACATAGACCTGTCTGTTAACCTACTTACAGGCCCGTTTCCGATAGAGCTTACTAAACTCCCGGCACTAGCATCCCAACAAGCAAATAATAAAGTAGAAAGGACTTACTTGGAGTTACCTGTCTTTGCTAATGCTAACAATGTTTCTTTGTTGCAATACAATCAACTTTCAAGCCTTCCACCGGCAATTTATCTCGGAACCAATCACCTTAATGGCAGCATCCCGATTGAGGTTGGCCAATTGAAAGTTCTTCATACGCTGGACCTGAAGTTAAACAACTTCTCTGGCAATATACCGGATCAACTTTCAAACTTGAATAACTTAGAGACACTAGACCTCTCGGGAAATCAACTATCAGGCGAAATTCCTGCTTCGCTCAATAATTTACATTTCTTGTCATTTTTCAGTGTAGCGAACAATAATCTTCGAGGTCAGATACCAACAGGTGCTCAGTTTAATACTTTTTCCAACTCCAGCTTTGAAGGAAATCCGCAATTGTGCGGTTCGGTTATTCAGCGCCCTTGTTCTTCTCAAAAAAATGCTACTAGTACTTCAGTTAGTAGCAAATCCAGCAAAAAAATAATAGTCATACTTATTATTGTTGTCAGTTTCGGCATAGCTACTATGGTAACATTGTTGACACTGTGGATACTCTCCAAGAGGAGGGTCAATCCAAGAGGAGATTCTGATAAGATTGAACTCGAATCAATTTCTCCGTACTCGAACAGCGGCGTTCATCCTGAAGTTGACAGAGAAGCTAGCCTAGTGGTATTGTTCCCCAACAAAAACAATGAAACCAAGGATCTTTGCATATTAGAGATCATAAAAGCTACTGAAAATTTCAGTCAGGCAAATATAGTAGGATGTGGCGGTTTCGGTTTGGTTTATAAAGCAACCTTTCAAAATGGAACTAAGCTAGCCATCAAGAAACTTTCAGGAGATTTAGGCCTAATGGAAAGGGAATTTAAAGCTGAAGTTGAGGCTTTGTCAACAGCACAACATGAGAATCTGGTAGCATTGCAAGGCTACTGCGTGCATGATGGTTATCGACTACTAATATATAATTACATGGAGAATGGAAGTCTCGATTACTGGTTGCACGAAAAGTCTGACGGTACGTTAGGTTACATTCCTCCAGAGTATGGACAAGCATGGGTGGCTACTCTAAGAGGCGATGTGTACAGCTTTGGAGTTGTTTTGCTTGAACTTCTCACCGGAAGAAGACCTATGGATGTATGCAAACCGAAAATTTCAAGGGAACTGGTTAGCTGGGTTCAACAGATGAAAATTGAAGGAAAACAAGAACAAGTATTTGACCCGAATCTACGAGGGAAGGGATTTGAAGCAGAGATGCTATACGTACTTGATGTGGCATGCATGTGTGTCAACATGAATCCTTTCAAGAGACCACGCATCAGAGAAGTTGTTGAATGGTTAAAAAATGTTGGATCAGAAAACCAGCTCAGAAATAACGATTAA 2565 0.3883 MTKILSCLSLQKSHLFHLLIGLLHLIVAIGKILAANGNLISFNVSNNSFTGHIPISSFCINNSAIKFLDFSSNDFVGVIDTGLGACSKLERFRAGFNFLTGNIPVDIYDAVSLTEISLPLNRINGTIGDGIVNLTNLTVLELYSNNLTGSIPKEIGKLSKLERLLLHVNNLTGPIPSSLMNCHNLVVLNLRVNDLEGNLSAFNFSGLVRLVTLDLGNNRFSGVLPPSLYDCKSLAALRLASNQLEGQVSSEILGLESLSFLSISKNMLKNITGALRILTGLKKLSTLMLSKNFYNEMLPNDANVIGPDGFQKIQVLGLGGCNFTGQIPSWLKNLKKLEAVDLSYNLLSGSIPPWLGTLSELFYIDLSVNLLTGPFPIELTKLPALASQQANNKVERTYLELPVFANANNVSLLQYNQLSSLPPAIYLGTNHLNGSIPIEVGQLKVLHTLDLKLNNFSGNIPDQLSNLNNLETLDLSGNQLSGEIPASLNNLHFLSFFSVANNNLRGQIPTGAQFNTFSNSSFEGNPQLCGSVIQRPCSSQKNATSTSVSSKSSKKIIVILIIVVSFGIATMVTLLTLWILSKRRVNPRGDSDKIELESISPYSNSGVHPEVDREASLVVLFPNKNNETKDLCILEIIKATENFSQANIVGCGGFGLVYKATFQNGTKLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGYRLLIYNYMENGSLDYWLHEKSDGTLGYIPPEYGQAWVATLRGDVYSFGVVLLELLTGRRPMDVCKPKISRELVSWVQQMKIEGKQEQVFDPNLRGKGFEAEMLYVLDVACMCVNMNPFKRPRIREVVEWLKNVGSENQLRNND 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00873 854 Gene3D Ribonuclease Inhibitor 203 546 IPR032675 -
Trre16g00873 854 PRINTS Leucine-rich repeat signature 210 223 - -
Trre16g00873 854 PRINTS Leucine-rich repeat signature 467 480 - -
Trre16g00873 854 PANTHER LEUCINE RICH REPEAT KINASE 2 732 845 - -
Trre16g00873 854 Gene3D Ribonuclease Inhibitor 110 202 IPR032675 -
Trre16g00873 854 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Trre16g00873 854 SUPERFAMILY Protein kinase-like (PK-like) 630 845 IPR011009 -
Trre16g00873 854 ProSitePatterns Protein kinases ATP-binding region signature. 649 672 IPR017441 GO:0005524
Trre16g00873 854 Gene3D Transferase(Phosphotransferase) domain 1 723 854 - -
Trre16g00873 854 ProSiteProfiles Protein kinase domain profile. 643 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00873 854 Gene3D Phosphorylase Kinase; domain 1 610 718 - -
Trre16g00873 854 FunFam Tyrosine-sulfated glycopeptide receptor 1 204 542 - -
Trre16g00873 854 Pfam Leucine Rich Repeat 469 491 IPR001611 GO:0005515
Trre16g00873 854 SMART serkin_6 643 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00873 854 SMART LRR_typ_2 334 358 IPR003591 -
Trre16g00873 854 SMART LRR_typ_2 255 277 IPR003591 -
Trre16g00873 854 SMART LRR_typ_2 467 491 IPR003591 -
Trre16g00873 854 SMART LRR_typ_2 207 231 IPR003591 -
Trre16g00873 854 SMART LRR_typ_2 134 158 IPR003591 -
Trre16g00873 854 SUPERFAMILY RNI-like 65 509 - -
Trre16g00873 854 ProSiteProfiles Leucine-rich repeat profile. 469 492 IPR001611 GO:0005515
Trre16g00873 854 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 104 199 - -
Trre16g00873 854 Gene3D Ribonuclease Inhibitor 28 109 IPR032675 -
Trre16g00873 854 Pfam Protein tyrosine and serine/threonine kinase 647 733 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00873 Trre-Chr16 6686967 6690418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00873 38 541 Miscellaneous Gene Families AT1G17240 56.040 2.02e-178 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre16g00873 PK_Tyr_Ser-Thr 2.9e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00873 - - gmx:100807989 1095.49