Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00866 ATGTCGGTGGATCCATGGCTGATGCTGATGTTGATGTTCATCAGCAGCACCTGTACTCTTCTCATCAATGGTGACACAGATCCAAATGATTTCTCTACTTTAATGAATCTGTTTCAAAGCATGAACTCGCCGTCCCAACTAAATTGGCAAGCCAATGGCAATAATGATCCTTGTGGACAATCTTGGACAGGCATCACTTGCTCAGGCAACCGAATCACCGAAATTAAGTTACCTGGTCATTCATTATCCGGAACTTTGAGTTACAATCTACAATCCTTGTCAGCTCTGACCAACCTAGATTTGAGTAACAACAATCTCGGTGGCACTATACCGTACTCATTTCCTCAACAAACATTGCAGCACTTAAATCTTGCTAATAATAATTTCAATGGAGGGATACCTTATGTTTTTTCTGATATACCTTCTCTTATAAGCCTGAATCTTGGTCACAATCAACTACAACAAGGACTGGCAATGAGCTTTCAAAAGCTTACTTCTCTTACTACATTGGACGTTTCTTTCAATTCTTTTACCGGAGAACTCCCTCAGACTATGAACTCACTATCAAGCATAAACACCATGAATCTACAAAACAACCAATTTACAGGAACCATTGATATCCTTGCTGATCTTCCTCTTCAAAACTTGAATATCGAAAACAATAAGTTTACAGGCTGGATACCAGAACAGTTGAAAAATATAAACCTACAAAAGAATGGTAATTCATGGAGCTCTGGACCTGCACCCCCACCTCCTCCTGGTACACCTCCAATAAACAAAAACAACGGTAATCACAAGTCTGGTGGACATAAAACCTCGTCAGATTCTGGCTCAAGTGAGGGAAGCAAAAAATCTGGTATAGGAGGTGGTGCCATTGCTGGAATAGTGATCTCTATCATAGTTGTTGGTGCAATAGTAGCAATCTTTCTGATGAAGAAAAGATCCAAGAAGTCGTCTGGAGATGTGGAAAAGCTAGACAATCGACCTTTGGCTCCTCTTACTTCGAATGAAGTGCATGGAATGAATTCAACGCAAACTTCTTCTGTAATTGACTTGAAGACATTTGATACTTCTGCGGCCTCAATAAATCTTAAACCCCCTCCTCATAAATCGTTTGATGAAAACGAGTTTCCAATGAAGCCCGCTGTTGTCAAGAAGACCGTAGCACCTCCTGCAAATCTGAAATCATATTCTATAGCTGACCTACAGATTGCTACGGGAAGCTTCAGTGTGGATCAGCTTCTTGGTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCCCAATAATTTGTCTGATGATTTTATGGAGATAGTTTCTAACCTCTCCCGTTTGCATCATCCGAATGTGACGGAGCTTGTAGGTTATTGTTCAGAGCATGGACAACACCTCTTAGTCTATGAGTTCCACAAAAATGGATCACTCCATGACTTCCTTCACCTCCCTGATGATTACATTAAACCATTGATATGGAATTCACGTGTCAAGATTGCTTTGGGAATTGCACGTGCTTTAGAGTACCTACATGAAGTGTGTTCGCCATCAGTTGTTCATAAGAATATAAAGGCAGCCAACATATTGCTTGATACTGATCTTAATCCTCATCTATCAGACAGTGGGTTGGCTAGCTATATTCCAAATGCAAACCAGGTATTGAACAATAATGCTGGATCTGGATACGATGCTCCAGAAGTCGGGTTGTCTGGTCAGTATACTCTTAAGAGTGATGTCTATAGCTTTGGAGTTGTCATGTTGGAGCTTCTAAGTGGACGGAAACCATTTGATAGTTCAAGATCAAGATTTGAGCAGTCGTTGGTTCGATGGGCGACACCTCAACTCCATGATATTGATGCATTGGCCAAAATGGTTGATCCTGCACTAGAAGGGCTATACCCTGTCAAGTCTCTTTCTCGATTCGCTGATGTCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTAGTTCGGTTAGTGCAACGAACCAACATGAGCAAACGGACATTTGGAACTGATGGAGGATCCAGCCGAGGGGGTGATGACCAAGACACCCTAGACATGTAA 2142 0.4192 MSVDPWLMLMLMFISSTCTLLINGDTDPNDFSTLMNLFQSMNSPSQLNWQANGNNDPCGQSWTGITCSGNRITEIKLPGHSLSGTLSYNLQSLSALTNLDLSNNNLGGTIPYSFPQQTLQHLNLANNNFNGGIPYVFSDIPSLISLNLGHNQLQQGLAMSFQKLTSLTTLDVSFNSFTGELPQTMNSLSSINTMNLQNNQFTGTIDILADLPLQNLNIENNKFTGWIPEQLKNINLQKNGNSWSSGPAPPPPPGTPPINKNNGNHKSGGHKTSSDSGSSEGSKKSGIGGGAIAGIVISIIVVGAIVAIFLMKKRSKKSSGDVEKLDNRPLAPLTSNEVHGMNSTQTSSVIDLKTFDTSAASINLKPPPHKSFDENEFPMKPAVVKKTVAPPANLKSYSIADLQIATGSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNNLSDDFMEIVSNLSRLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDDYIKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKAANILLDTDLNPHLSDSGLASYIPNANQVLNNNAGSGYDAPEVGLSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRSRFEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTFGTDGGSSRGGDDQDTLDM 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00866 713 MobiDBLite consensus disorder prediction 318 342 - -
Trre16g00866 713 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 682 - -
Trre16g00866 713 Gene3D Transferase(Phosphotransferase) domain 1 488 699 - -
Trre16g00866 713 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Trre16g00866 713 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
Trre16g00866 713 MobiDBLite consensus disorder prediction 237 285 - -
Trre16g00866 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 27 254 - -
Trre16g00866 713 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Trre16g00866 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 695 - -
Trre16g00866 713 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00866 713 MobiDBLite consensus disorder prediction 259 283 - -
Trre16g00866 713 Gene3D Ribonuclease Inhibitor 27 262 IPR032675 -
Trre16g00866 713 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Trre16g00866 713 SUPERFAMILY L domain-like 27 233 - -
Trre16g00866 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 373 486 - -
Trre16g00866 713 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Trre16g00866 713 Gene3D Phosphorylase Kinase; domain 1 376 486 - -
Trre16g00866 713 CDD STKc_IRAK 415 684 - -
Trre16g00866 713 MobiDBLite consensus disorder prediction 692 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00866 Trre-Chr16 6617886 6623885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00866 21 712 Strubbelig Receptor Gene Family AT1G53730 66.430 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre16g00866 PK_Tyr_Ser-Thr 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00866 - - gmx:100780323 1045.8