Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00865 ATGGCAATCGATAGCGATGAGATCAAGGACGAAAAGAATCCTCGTCCACTCGACGAGGATGATATCGCCCTTCTCAAAACCTACGGTTTGGGACCTTATTCCACAGGCATAAAGAAAGTGGAGAAGGAAATCAAAGATATGGCAAAGAAAGTGAATGACTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAGATGATGCAGGAGGAGCAGCCTCTTCAGGTTGCAAGATGCACAAAAATTATAAATCCAAACTCCGAGGATGCCAAATATGTTATCAATGTGAAGCAGATTGCAAAGTTTGTTGTTGGGCTCGGAGACAAGGTTTCTCCCACTGACATAGAGGAAGGAATGCGTGTTGGTGTTGATAGAAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTTACAATGATGACAGTTGAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGTTGTAAGGAACAGATTGAAAAGATGCGTGAAGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGAATTGATCCACCAAAGGGTGTGCTTTGTTATGGTCCTCCAGGAACTGGCAAAACACTTCTAGCCAGGGCTGTTGCTAATAGAACTGATGCCTGTTTTATTAGGGTCATTGGAAGTGAACTAGTTCAGAAATATGTTGGTGAGGGAGCTCGGATGGTTCGTGAGCTATTTCAGATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCACGATTTGATGACGGTGTTGGTGGTGATAATGAGGTTCAGCGAACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAACATCAAAGTTTTAATGGCAACAAACAGGCCTGACACTCTGGACCCAGCACTATTACGACCTGGACGATTGGATCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACACAGATATTCAAGATTCACACAAGAACCATGAACTGTGAAAGGGATATCCGTTTCGAGCTTCTAGCTCGGCTCTGCCCAAACTCTACTGGAGCTGATATAAGGAGTGTATGCACAGAAGCTGGTATGTATGCTATCCGCGCCCGAAGGAAGACTGTAACAGAGAAAGACTTCCTTGATGCAGTGAATAAAGTCATCAAAGGGTACCAGAAGTTCAGTGCCACTCCCAAATATATGGTCTACAATTGA 1278 0.4304 MAIDSDEIKDEKNPRPLDEDDIALLKTYGLGPYSTGIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00865 425 FunFam 26S protease regulatory subunit 7 338 409 - -
Trre16g00865 425 FunFam 26S protease regulatory subunit 7 157 336 - -
Trre16g00865 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 415 IPR027417 -
Trre16g00865 425 ProSitePatterns AAA-protein family signature. 307 325 IPR003960 GO:0005524|GO:0016887
Trre16g00865 425 Gene3D - 338 419 - -
Trre16g00865 425 Gene3D - 157 336 IPR027417 -
Trre16g00865 425 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 8 411 - -
Trre16g00865 425 FunFam 26S protease regulatory subunit 7 32 156 - -
Trre16g00865 425 SMART AAA_5 200 339 IPR003593 GO:0016887
Trre16g00865 425 Pfam ATPase family associated with various cellular activities (AAA) 204 336 IPR003959 GO:0005524|GO:0016887
Trre16g00865 425 Gene3D - 33 156 IPR012340 -
Trre16g00865 425 Pfam AAA+ lid domain 359 402 IPR041569 -
Trre16g00865 425 CDD RecA-like_PAN_like 165 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00865 Trre-Chr16 6613364 6616203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00865 169 390 Calmodulin-binding Proteins AT3G56690 37.220 1.54e-41 155