Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00861 ATGTCAACAAAAACAATCCTCAAATTCTTCACAATAATTATTTTTATGGCAAATTCATTTCAAGAAAACATATTCAAGATTCTTCATAAGCTCTACAAGAATTATTTCTATGTTGGTGGTTCAATGAAGGAAATAGATCAAAGTGAAAGTGAATGTTGTTCAATTTGTTTAAACCAAATGTGTAAAGGAGAAAAAGTTAGATTATTACCTTTATGTAATCATAGATATCATTCTGATTGTATTGGTGCTTGGTTGAAGAACAATACTACATGTCCTCTTTGTAGAAGCAAAAACAGTGATCATAGTATTAATCAGAATCAACAAAAACAGGTTAAACCTTTTGGAGAATCTATGGTTGATCTTATACAAAGTTTCTCTGATGTAATTGTAGCTATTCTTTATATGATTCTTCCATCTAGTATCACTGAAAGTTTTCCTATTGTTCATTGA 450 0.2889 MSTKTILKFFTIIIFMANSFQENIFKILHKLYKNYFYVGGSMKEIDQSESECCSICLNQMCKGEKVRLLPLCNHRYHSDCIGAWLKNNTTCPLCRSKNSDHSINQNQQKQVKPFGESMVDLIQSFSDVIVAILYMILPSSITESFPIVH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00861 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 115 IPR013083 -
Trre16g00861 149 CDD RING-H2_PA-TM-RING 52 95 - -
Trre16g00861 149 SMART ring_2 53 94 IPR001841 -
Trre16g00861 149 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 30 106 IPR045899 -
Trre16g00861 149 Pfam Ring finger domain 53 95 IPR001841 -
Trre16g00861 149 SUPERFAMILY RING/U-box 42 99 - -
Trre16g00861 149 ProSiteProfiles Zinc finger RING-type profile. 53 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00861 Trre-Chr16 6552883 6553332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00861 26 95 C3H Transcription Factor Family AT2G17450 38.667 1.41e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00861 - - tpra:123883175 277.715