Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00860 ATGGGTGCAACTGCAATATCAGGAACAAGTGATACATTGGGTGAATCTAATGCAATTGAATTAACAGGAAAAATCATGGTGGTAGCTATAATTTTCTTGTTCATGGTTGTTATGTTTGTTCTAATGCTTCATCTTTATGCTAAATGGTTTTGGTGGCGTTTTGAGGAAAGAACTGTTCCTCAACCACAAAACCGCCGTCGCCGTCGACGGCGGTTTGTTTTTGCTCCTGGTCAAGATCCTGTTGTCTATGCAACTCATCAAACTGGACTTGATGCTTCAATTCTTAAATCTTTACCTGTTTTGGTTTTCAAACCTGAAGATTTCAAAGATGATTTAGAATGTGCTGTTTGTCTTTGTGATATTGTTGAAGGAGAAAAAACAAGACTTTTACCAAAATGTAATCATGGGTTTCATTTAGATTGTATTGATATGTGGTTTCAATCTCATTCTACTTGTCCTCTTTGTAGGAATTTAGTTTCTGTTGAATCCTCAAATGGTGAAGAGATCAAAGTGTTAGTTTCATCAGAAAGTGATGAAAATTTGAGTCCTATGAATGATTTAGAGTCTTCAAATTTTCCTACAAATGTCTTGGTTTGGGGGAATCATCAAACACAAGTTAATTCTTCTAGTATTTGTTTGGATGAAGGAAGTTCTCAACAACAATCTTATTCAACATCATCATCATGTTCTTTAGATGGTGAAAATGTTAGCAATAGTAGATGTAATGGAAATGGAATGTTGGTGATTGATATACCATTACAAAATGAGTTTAGTTCTTCTTCTGATAGTAGGTGTGTTGAAGATGAAATGAAATCACCAATGTCAACAAGGTTGAGATCATTTAAGAGGCTTTTAAGTAGGGACAAAAAGTTAAGTGCTTCAAGTCCTAGTTCTATGGATGTCGAACAAGGCTCGAGCTAA 921 0.3518 MGATAISGTSDTLGESNAIELTGKIMVVAIIFLFMVVMFVLMLHLYAKWFWWRFEERTVPQPQNRRRRRRRFVFAPGQDPVVYATHQTGLDASILKSLPVLVFKPEDFKDDLECAVCLCDIVEGEKTRLLPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSVESSNGEEIKVLVSSESDENLSPMNDLESSNFPTNVLVWGNHQTQVNSSSICLDEGSSQQQSYSTSSSCSLDGENVSNSRCNGNGMLVIDIPLQNEFSSSSDSRCVEDEMKSPMSTRLRSFKRLLSRDKKLSASSPSSMDVEQGSS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00860 306 MobiDBLite consensus disorder prediction 258 279 - -
Trre16g00860 306 MobiDBLite consensus disorder prediction 290 306 - -
Trre16g00860 306 SMART ring_2 114 155 IPR001841 -
Trre16g00860 306 FunFam RING-H2 finger protein ATL3 82 161 - -
Trre16g00860 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 160 IPR013083 -
Trre16g00860 306 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Trre16g00860 306 CDD RING-H2_EL5-like 113 156 - -
Trre16g00860 306 Pfam Ring finger domain 113 156 IPR001841 -
Trre16g00860 306 MobiDBLite consensus disorder prediction 262 279 - -
Trre16g00860 306 SUPERFAMILY RING/U-box 94 161 - -
Trre16g00860 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 257 - -
Trre16g00860 306 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00860 Trre-Chr16 6545442 6546362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00860 20 289 C3H Transcription Factor Family AT1G53820 45.270 7.34e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00860 - - cam:101491184 377.867