Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00853 ATGAACAAAATAAAACAATCTCTTGCCGGAATCTCGAATTCCGGCAATAAGAAAAAACTCTTCATCTCCCTTTTCACAACTCTTCTCATTGTAGCTTCCATTATTGCCATTGTTGCATCAACAACAAAAAATTCCAACAAAAACAAAATTGCTTCATCTTCTCTTTCACTCTCTCACCATTCACACACCATTATAAAAAATGCTTGCACAACCACACTCTACCCTGAACTCTGTTTCTCAGCTTTAGCCTCTGAACCAAACATAACTCACAAAGTCACCAACCACAAAGATGTAATTTCATTGTCTCTTAATATCACAACAAGAGCCGTTGAACACAATTACTTCACCGTCAAAAAACTCCTCTTGCGAAAAACTCTCACAAAAAGAGAGAAAACTGCTCTTCATGATTGTTTAGAAACCATTGATGAAACTCTAGATGAACTCAAAGAAGCAGAGGAAGATCTTGTACTTTACCCAACTAAAAAGACACTTTATCAACATGCTAATGATCTTAAAACACTCATAAGCTCTGCCATTACCAACCAGGTAACTTGCTTGGATGGATTCTCACACGATGGTGCCGATAAGCTTGTAAGGAAGGCTCTAGAAGCGGGACAAGTTCATGTGGAACACATGTGTAGTAATGCATTAGCCATGATTAAGAACATGACGGACACAGATATAGCGGAATTTGAACAAGCCAATACGGTGTTAGGAAGTGGAAAAAATAGGAAATTATTGGAAGACGAAAGTGGAGTGCAGTGGCCGGAGTGGATATCGGCAGGGGACAGAAGGCTACTTCAAGGGGCAGCGGTGAAAGCGGATGTGGTGGTGGCAGCGGACGGAAGTGGTAACTTTAAGACGGTATCCGAGGCTGTGGCTGCTGCTCCTTTGAAGAGTAGTAAGAGATTTGTTATTAAGATAAAAGCTGGGGTGTATAGAGAAAATGTGGATGTGCCAAAGAAAGTAACTAATATAATGTTTTTGGGAGATGGTAGAACTAATACTATTATCACTGGCAGTAGAAATGTTGTTGATGGAAGCACCACTTTTCACTCTGCCACTGTTGCCATAGTTGGAGGGAACTTTTTAGCAAGAGACATAACATTCCAAAACACAGCTGGTCCCTCAAAGCACCAAGCAGTTGCCCTAAGAGTTGGTGCTGACCTATCAGCCTTCTACAATTGTGACATCATAGCATACCAAGACACACTCTATGTTCACAACAATAGACAATTTTATGTAAATTGTTTCATCTCCGGTACCGTCGATTTCATCTTTGGCAATGCGGCCGTTGTGTTTCAAAATTGTGACATACATGCTCGGCGTCCAGATTCAGGACAAAAAAATATGGTCACGGCACAAGGTAGAGTTGATCCTAATCAAAACACTGGAATTGTTATACAAAAATGTAGAATTGGTGCTACTAAAGATTTGGAGGGTGTGAAAAACAATTTTCCTACATATCTTGGGAGACCTTGGAAGGAATATTCAAGGACAGTGATTATGCAAAGTAGCATTAGTGATGTTATTCAACCTGCTGGGTGGCATGAATGGAATGGTAATTTTGCATTAAATACTTTGGTTTATAGGGAATATCAAAATACTGGGCCTGGTGCTGGTACTTCTAAGAGGGTTACTTGGAAAGGATTTAAGGTCATTACTGCTGCTGCTGAGGCCCAAAGTTTTACTGCTGGAAATTTTATTGGTGGGTCTAGTTGGTTGGGCTCAACTGGGTTTCCTTTCTCTCTTGGGCTATAA 1761 0.4043 MNKIKQSLAGISNSGNKKKLFISLFTTLLIVASIIAIVASTTKNSNKNKIASSSLSLSHHSHTIIKNACTTTLYPELCFSALASEPNITHKVTNHKDVISLSLNITTRAVEHNYFTVKKLLLRKTLTKREKTALHDCLETIDETLDELKEAEEDLVLYPTKKTLYQHANDLKTLISSAITNQVTCLDGFSHDGADKLVRKALEAGQVHVEHMCSNALAMIKNMTDTDIAEFEQANTVLGSGKNRKLLEDESGVQWPEWISAGDRRLLQGAAVKADVVVAADGSGNFKTVSEAVAAAPLKSSKRFVIKIKAGVYRENVDVPKKVTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFYVNCFISGTVDFIFGNAAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKNNFPTYLGRPWKEYSRTVIMQSSISDVIQPAGWHEWNGNFALNTLVYREYQNTGPGAGTSKRVTWKGFKVITAAAEAQSFTAGNFIGGSSWLGSTGFPFSLGL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00853 586 FunFam Pectinesterase 61 224 - -
Trre16g00853 586 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Trre16g00853 586 Pfam Plant invertase/pectin methylesterase inhibitor 64 219 IPR006501 GO:0004857
Trre16g00853 586 Pfam Pectinesterase 275 571 IPR000070 GO:0030599|GO:0042545
Trre16g00853 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 224 IPR035513 -
Trre16g00853 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 224 IPR035513 -
Trre16g00853 586 PANTHER PECTINESTERASE 34 576 - -
Trre16g00853 586 FunFam Pectinesterase 269 586 - -
Trre16g00853 586 NCBIfam pectinesterase inhibitor domain 54 223 IPR006501 GO:0004857
Trre16g00853 586 CDD PMEI-like_3 68 224 - -
Trre16g00853 586 SUPERFAMILY Pectin lyase-like 270 585 IPR011050 -
Trre16g00853 586 Gene3D - 269 586 IPR012334 -
Trre16g00853 586 SMART PMEI_2 60 219 IPR006501 GO:0004857
Trre16g00853 586 Coils Coil 134 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00853 Trre-Chr16 6500469 6507317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00853 16 586 Carbohydrate Esterase AT3G14310 71.210 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00853 K01051 - pvu:PHAVU_010G123100g 907.516