Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Trre16g00852
ATGATGAACAAAATAAAACAATCTCTTGCCGGAATCTCGAATTCCGGCAATAAGAAAAAACTCTTCATCTCCCTTTTCACAACTCTTCTCATTGTAGCTTCCATTATTGCCATTGTTGCATCAACAACAAAAAATTCCAACAAAAACAAAATTGCTTCATCTTCTCTTTCACTCTCTCACCATTCACACACCATTATAAAAAATGCTTGCACAACCACACTCTACCCTGAACTCTGTTTCTCAGCTTTAGCCTCTGAACCAAACATAACTCACAAAGTCACCAACCACAAAGATGTAATTTCATTGTCTCTTAATATCACAACAAGAGCCGTTGAACACAATTACTTCACCGTCAAAAAACTCCTCTTGCGAAAAACTCTCACAAAAAGAGAGAAAACTGCTCTTCATGATTGTTTAGAAACCATTGATGAAACTCTAGATGAACTCAAAGAAGCAGAGGAAGATCTTGTACTTTACCCAACTAAAAAGACACTTTATCAACATGCTAATGATCTTAAAACACTCATAAGCTCTGCCATTACCAACCAGGTAACTTGCTTGGATGGATTCTCACACGATGGTGCCGATAAGCTTGTAAGGAAGGCTCTAGAAGCGGGACAAGTTCATGTGGAACACATGTGTAGTAATGCATTAGCCATGATTAAGAACATGACGGACACAGATATAGCGGAATTTGAACAAGCCAATACGGTGTTAGGAAGTGGAAAAAATAGGAAATTATTGGAAGACGAAAGTGGAGTGCAGTGGCCGGAGTGGATATCGGCAGGGGACAGAAGGCTACTTCAAGGGGCAGCGGTGAAAGCGGATGTGGTGGTGGCAGCGGACGGAAGTGGTAACTTTAAGACGGTATCCGAGGCTGTGGCTGCTGCTCCTTTGAAGAGTAGTAAGAGATTTGTTATTAAGATAAAAGCTGGGGTGTATAGAGAAAATGTGGATGTGCCAAAGAAAGTAACTAATATAATGTTTTTGGGAGATGGTAGAACTAATACTATTATCACTGGCAGTAGAAATGTTGTTGATGGAAGCACCACTTTTCACTCTGCCACTGTTGCCATAGTTGGAGGGAACTTTTTAGCAAGAGACATAACATTCCAAAACACAGCTGGTCCCTCAAAGCACCAAGCAGTTGCCCTAAGAGTTGGTGCTGACCTATCAGCCTTCTACAATTGTGACATCATAGCATACCAAGACACACTCTATGTTCACAACAATAGACAATTTTATGTAAATTGTTTCATCTCCGGTACCGTCGATTTCATCTTTGGCAATGCGGCCGTTGTGTTTCAAAATTGTGACATACATGCTCGGCGTCCAGATTCAGGACAAAAAAATATGGTCACGGCACAAGGTAGAGTTGATCCTAATCAAAACACTGGAATTGTTATACAAAAATGTAGAATTGGTGCTACTAAAGATTTGGAGGGTGTGAAAAACAATTTTCCTACATATCTTGGGAGACCTTGGAAGGAATATTCAAGGACAGTGATTATGCAAAGTAGCATTAGTGATGTTATTCAACCTGCTGGGTGGCATGAATGGAATGGTAATTTTGCATTAAATACTTTGGTTTATAGGGAATATCAAAATACTGGGCCTGGTGCTGGTACTTCTAAGAGGGTTACTTGGAAAGGATTTAAGGTCATTACTGCTGCTGCTGAGGCCCAAAGTTTTACTGCTGGAAATTTTATTGGTGGGTCTAGTTGGTTGGGCTCAACTGGGTTTCCTTTCTCTCTTGGGCTATAA
1764
0.4042
MMNKIKQSLAGISNSGNKKKLFISLFTTLLIVASIIAIVASTTKNSNKNKIASSSLSLSHHSHTIIKNACTTTLYPELCFSALASEPNITHKVTNHKDVISLSLNITTRAVEHNYFTVKKLLLRKTLTKREKTALHDCLETIDETLDELKEAEEDLVLYPTKKTLYQHANDLKTLISSAITNQVTCLDGFSHDGADKLVRKALEAGQVHVEHMCSNALAMIKNMTDTDIAEFEQANTVLGSGKNRKLLEDESGVQWPEWISAGDRRLLQGAAVKADVVVAADGSGNFKTVSEAVAAAPLKSSKRFVIKIKAGVYRENVDVPKKVTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFYVNCFISGTVDFIFGNAAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKNNFPTYLGRPWKEYSRTVIMQSSISDVIQPAGWHEWNGNFALNTLVYREYQNTGPGAGTSKRVTWKGFKVITAAAEAQSFTAGNFIGGSSWLGSTGFPFSLGL
587
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Trre16g00852
587
SUPERFAMILY
Pectin lyase-like
271
586
IPR011050
-
Trre16g00852
587
CDD
PMEI-like_3
69
225
-
-
Trre16g00852
587
SUPERFAMILY
Plant invertase/pectin methylesterase inhibitor
64
225
IPR035513
-
Trre16g00852
587
ProSitePatterns
Pectinesterase signature 2.
420
429
IPR033131
-
Trre16g00852
587
NCBIfam
pectinesterase inhibitor domain
55
224
IPR006501
GO:0004857
Trre16g00852
587
FunFam
Pectinesterase
62
225
-
-
Trre16g00852
587
Gene3D
Invertase/pectin methylesterase inhibitor family protein
61
225
IPR035513
-
Trre16g00852
587
Gene3D
-
270
587
IPR012334
-
Trre16g00852
587
Coils
Coil
135
155
-
-
Trre16g00852
587
PANTHER
PECTINESTERASE
35
577
-
-
Showing 1 to 10 of 14 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Trre16g00852
Trre-Chr16
6500469
6507320
Dispersed/Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Trre16g00852
17
587
Carbohydrate Esterase
AT3G14310
71.210
0.0
828
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Trre16g00852
K01051
-
pvu:PHAVU_010G123100g
907.516
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
