Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00852 ATGATGAACAAAATAAAACAATCTCTTGCCGGAATCTCGAATTCCGGCAATAAGAAAAAACTCTTCATCTCCCTTTTCACAACTCTTCTCATTGTAGCTTCCATTATTGCCATTGTTGCATCAACAACAAAAAATTCCAACAAAAACAAAATTGCTTCATCTTCTCTTTCACTCTCTCACCATTCACACACCATTATAAAAAATGCTTGCACAACCACACTCTACCCTGAACTCTGTTTCTCAGCTTTAGCCTCTGAACCAAACATAACTCACAAAGTCACCAACCACAAAGATGTAATTTCATTGTCTCTTAATATCACAACAAGAGCCGTTGAACACAATTACTTCACCGTCAAAAAACTCCTCTTGCGAAAAACTCTCACAAAAAGAGAGAAAACTGCTCTTCATGATTGTTTAGAAACCATTGATGAAACTCTAGATGAACTCAAAGAAGCAGAGGAAGATCTTGTACTTTACCCAACTAAAAAGACACTTTATCAACATGCTAATGATCTTAAAACACTCATAAGCTCTGCCATTACCAACCAGGTAACTTGCTTGGATGGATTCTCACACGATGGTGCCGATAAGCTTGTAAGGAAGGCTCTAGAAGCGGGACAAGTTCATGTGGAACACATGTGTAGTAATGCATTAGCCATGATTAAGAACATGACGGACACAGATATAGCGGAATTTGAACAAGCCAATACGGTGTTAGGAAGTGGAAAAAATAGGAAATTATTGGAAGACGAAAGTGGAGTGCAGTGGCCGGAGTGGATATCGGCAGGGGACAGAAGGCTACTTCAAGGGGCAGCGGTGAAAGCGGATGTGGTGGTGGCAGCGGACGGAAGTGGTAACTTTAAGACGGTATCCGAGGCTGTGGCTGCTGCTCCTTTGAAGAGTAGTAAGAGATTTGTTATTAAGATAAAAGCTGGGGTGTATAGAGAAAATGTGGATGTGCCAAAGAAAGTAACTAATATAATGTTTTTGGGAGATGGTAGAACTAATACTATTATCACTGGCAGTAGAAATGTTGTTGATGGAAGCACCACTTTTCACTCTGCCACTGTTGCCATAGTTGGAGGGAACTTTTTAGCAAGAGACATAACATTCCAAAACACAGCTGGTCCCTCAAAGCACCAAGCAGTTGCCCTAAGAGTTGGTGCTGACCTATCAGCCTTCTACAATTGTGACATCATAGCATACCAAGACACACTCTATGTTCACAACAATAGACAATTTTATGTAAATTGTTTCATCTCCGGTACCGTCGATTTCATCTTTGGCAATGCGGCCGTTGTGTTTCAAAATTGTGACATACATGCTCGGCGTCCAGATTCAGGACAAAAAAATATGGTCACGGCACAAGGTAGAGTTGATCCTAATCAAAACACTGGAATTGTTATACAAAAATGTAGAATTGGTGCTACTAAAGATTTGGAGGGTGTGAAAAACAATTTTCCTACATATCTTGGGAGACCTTGGAAGGAATATTCAAGGACAGTGATTATGCAAAGTAGCATTAGTGATGTTATTCAACCTGCTGGGTGGCATGAATGGAATGGTAATTTTGCATTAAATACTTTGGTTTATAGGGAATATCAAAATACTGGGCCTGGTGCTGGTACTTCTAAGAGGGTTACTTGGAAAGGATTTAAGGTCATTACTGCTGCTGCTGAGGCCCAAAGTTTTACTGCTGGAAATTTTATTGGTGGGTCTAGTTGGTTGGGCTCAACTGGGTTTCCTTTCTCTCTTGGGCTATAA 1764 0.4042 MMNKIKQSLAGISNSGNKKKLFISLFTTLLIVASIIAIVASTTKNSNKNKIASSSLSLSHHSHTIIKNACTTTLYPELCFSALASEPNITHKVTNHKDVISLSLNITTRAVEHNYFTVKKLLLRKTLTKREKTALHDCLETIDETLDELKEAEEDLVLYPTKKTLYQHANDLKTLISSAITNQVTCLDGFSHDGADKLVRKALEAGQVHVEHMCSNALAMIKNMTDTDIAEFEQANTVLGSGKNRKLLEDESGVQWPEWISAGDRRLLQGAAVKADVVVAADGSGNFKTVSEAVAAAPLKSSKRFVIKIKAGVYRENVDVPKKVTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFYVNCFISGTVDFIFGNAAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKNNFPTYLGRPWKEYSRTVIMQSSISDVIQPAGWHEWNGNFALNTLVYREYQNTGPGAGTSKRVTWKGFKVITAAAEAQSFTAGNFIGGSSWLGSTGFPFSLGL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00852 587 SUPERFAMILY Pectin lyase-like 271 586 IPR011050 -
Trre16g00852 587 CDD PMEI-like_3 69 225 - -
Trre16g00852 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 225 IPR035513 -
Trre16g00852 587 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Trre16g00852 587 NCBIfam pectinesterase inhibitor domain 55 224 IPR006501 GO:0004857
Trre16g00852 587 FunFam Pectinesterase 62 225 - -
Trre16g00852 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 225 IPR035513 -
Trre16g00852 587 Gene3D - 270 587 IPR012334 -
Trre16g00852 587 Coils Coil 135 155 - -
Trre16g00852 587 PANTHER PECTINESTERASE 35 577 - -
Trre16g00852 587 FunFam Pectinesterase 270 587 - -
Trre16g00852 587 SMART PMEI_2 61 220 IPR006501 GO:0004857
Trre16g00852 587 Pfam Plant invertase/pectin methylesterase inhibitor 65 220 IPR006501 GO:0004857
Trre16g00852 587 Pfam Pectinesterase 276 572 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00852 Trre-Chr16 6500469 6507320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00852 17 587 Carbohydrate Esterase AT3G14310 71.210 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00852 K01051 - pvu:PHAVU_010G123100g 907.516