Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00851 ATGGATAGTATGAAATCTTTCAAAGGTTACGGCAAAGTAGACGAAATAGAACAACAAGCATTTCAAAAGAAGACACGTAAGCGCATCACAATCATAATAATCTCCGCCGTTATTCTATTAGCGGTTATCATTGCTGCTGTTGCAGGAATCCTCATACACAAGCGCAACACCTCATCCTCTTCCTCTTCTGACTCGCTCCCTAAAACTCAGTTAACACCCGCCACTTCACTCAAAGCAGTTTGCGATGCAACTCAGTACCCTAACTCCTGCTTTGCCGCAATCTCATCTCTTCCAGATTCCAACACCACCGATCCTGAACAACTCTTCAAACTCTCTCTCAAAGTTGCCATTGATGAACTCTCAAGTCTCACGCGCGGTTTCAGTGATAAAATCCAAGCGAGTGGTGACACGCGCCTTAAGAAAGCGATTGAAGTTTGCGGTTCGGTTTTGAACGATTCGTTAGATCGGCTTAATGATTCAATGTCGACGATTGTTTCCGATGAGAAGATTCTTTCTCCGACGAAGATTCGAGATGTTGAGACGTGGATAAGTGCGGCGTTAACAGATCATGACACGTGTTTGGATGCTGTTGGTGAATTGAACTCAACTGCTGCGAAAACTCTTCGTAGTGAAATTGAAACCGCGATGAGAAACTCGACGGAGTCTGCGAGTAATAGTTTAGCGATTGTGACGAAGGTGATAAGATTATTATCGAATTTCGAGGTTCCGAATCATAACCGGAGGTTGCTCGGAGATTTTCCGGAGTGGTTGGGAGCGGCGGAGAGGAGGCTTCTTGCGGCGGAGGGGAATGGGACTACGGTGACGGCGGATACGCCGGATGCGGTGGTGGCGAAGGATGGAAGTGGACAGTATAAGACGATAGGGGAAGCGTTGAAGATGGCACCGAAGAAGAGTGAGAAGAGATTTGTGGTTTATGTGAAGAAAGGGGAATATGTAGAGAATATTGATTTGGATAAGAATACATGGAATGTGATGATTCGCGGTGATGGTATGACGGAAACCGTCGTAACTGGTAGCCGGAATTTCATGGACGGTACACCTACGTTTGAAACTGCAACTTTTGCTGTTAAAGGCAAGGGATTCATTGCTAAAGACATACAATTCAAGAACACTGCAGGTGCATCTAAGCACCAGGCTGTCGCATTTCGATCCGGCTCGGATCAATCTGTGTTCTACAGGTGTTCATTTGTGGGATTTCAGGATACCCTTTATGCACATTCAAACCGTCAATTCTACCGTGACTGTGACATTACAGGTACTATAGACTTCATATTCGGAAACGCGGCTGTTGTGTTCCAAAATTGCAAAATCATGCCTAGGCAACCGCTACCAAACCAGTTCAACACCATCACAGCTCAGGGTAAGAAGGATCCTAATCAAAACACTGGAATTGTGATCCAGAAATCAACTATCACTACACTACCTAATGACAATCTCATAGCACCTACTTACCTTGGTAGACCATGGAAAGATTTCTCCACAACTATTATCATGAAATCAGAAATTGGGTCATTCTTGAAACCAGTAGGGTGGATAAGTTGGGTTTTTAATGTGGATCCTCCAAGTAGCATTCTCTATGCTGAATACCAGAACACTGGGCCAGGAGCTGCAGTAGCCCAGAGAGTCAAATGGGCCGGTTATAAGTCCGCTCTCGAAGACGAAGAAGCTCTGAAGTTCACTGTGGATTCCTTTATCCAGGGGCCAGAGTGGTTGCCAAATGCTGCTGTGCAGTTTGATTCTACCTTGTAA 1770 0.452 MDSMKSFKGYGKVDEIEQQAFQKKTRKRITIIIISAVILLAVIIAAVAGILIHKRNTSSSSSSDSLPKTQLTPATSLKAVCDATQYPNSCFAAISSLPDSNTTDPEQLFKLSLKVAIDELSSLTRGFSDKIQASGDTRLKKAIEVCGSVLNDSLDRLNDSMSTIVSDEKILSPTKIRDVETWISAALTDHDTCLDAVGELNSTAAKTLRSEIETAMRNSTESASNSLAIVTKVIRLLSNFEVPNHNRRLLGDFPEWLGAAERRLLAAEGNGTTVTADTPDAVVAKDGSGQYKTIGEALKMAPKKSEKRFVVYVKKGEYVENIDLDKNTWNVMIRGDGMTETVVTGSRNFMDGTPTFETATFAVKGKGFIAKDIQFKNTAGASKHQAVAFRSGSDQSVFYRCSFVGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKSTITTLPNDNLIAPTYLGRPWKDFSTTIIMKSEIGSFLKPVGWISWVFNVDPPSSILYAEYQNTGPGAAVAQRVKWAGYKSALEDEEALKFTVDSFIQGPEWLPNAAVQFDSTL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00851 589 Gene3D - 275 589 IPR012334 -
Trre16g00851 589 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Trre16g00851 589 SUPERFAMILY Pectin lyase-like 278 586 IPR011050 -
Trre16g00851 589 FunFam Pectinesterase 73 234 - -
Trre16g00851 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 233 IPR035513 -
Trre16g00851 589 CDD PMEI-like_3 79 232 - -
Trre16g00851 589 FunFam Pectinesterase 274 589 - -
Trre16g00851 589 PANTHER PECTINESTERASE 33 579 - -
Trre16g00851 589 SMART PMEI_2 72 229 IPR006501 GO:0004857
Trre16g00851 589 Pfam Plant invertase/pectin methylesterase inhibitor 77 229 IPR006501 GO:0004857
Trre16g00851 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 233 IPR035513 -
Trre16g00851 589 Pfam Pectinesterase 280 574 IPR000070 GO:0030599|GO:0042545
Trre16g00851 589 NCBIfam pectinesterase inhibitor domain 61 232 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00851 Trre-Chr16 6490756 6493810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00851 1 583 Carbohydrate Esterase AT1G53840 57.956 0.0 679