Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00841 ATGGAAACCGAAGCTCCATCAATGGAGAATCCCAAAATCTCAGCCTATTACCAGACGAGGTTAGCGCACTTCGGTGTCGTCAGTACAGAGTGGTTAGCTCAGGCTCAATCCGCAACAAAACCTCTCCCATCATCATCAACCGATTCAGACACTGATAAAGATACCAATTTCTCTGTAATTGATGAATTCAACCGGTGGCGTAATCATCCTGATTTGGCTGAAGCTGTTGCCGCAATTCGTGCCCTTGCTGCCGTTATCAGTTCTAGCAAAGCTTCTACTATGATGCAACTCGAAATTGAACTCAAAAATGCCTCTGATACTCTCAAAGCATGGGATACAACCTCTATCTCATTGACAGCGGCATCTGATCTGTTTATGAGATACGTGACAAGGACCTCTGCTTTGGAATTTGAAGACTTCAATTCTGCTAAATCTCGCTTGATTGAGCGTGCTGACAAGTTTGGGGAAATTTCCTACAAGGCTCGCAAAATTATTGCAATGCTTAGTCAAGATTTTATATTTGATGGTTGTACCATTTTGGTTCATGGTTTTTCCAGAGTTGTCTTTGAAGTTCTTAAACTGGCTGCACATAATAAAAAACGCTTCCGGGTCTTCTGCACTGAGGGTAGACCAGACCGAACAGGTTTAAGGTTGTCCAATGAGCTGGCCAAGCTTGATGTTCCTGTGAAACTGGTGATAGACTCTGCAGTGGCTTATACTATGGATGAGGTAGACATGGTAATTGTGGGGGCAGATGGAGTTGTTGAAAGTGGTGGTATAATTAACATGATGGGGACATACCAAATTGCGTTGGTTGCAAAGTGTATGAATAAGCCACTCTATGTGGCTGCCGAAAGCTACAAGTTTGCTCGTCATTACCCTCTAGACCAAAAGGATTTGGCGCCGGCCATACGACCAGTTGATTTTGGTGTACCTATTCCATCCAAGGTTGACGTTGAATGCTCTGCCCGGGATTATACTCCTCCTCAATACCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCAGTTGTTAGTGATGAGCTCATCCAGCTGTACTTATAA 1071 0.437 METEAPSMENPKISAYYQTRLAHFGVVSTEWLAQAQSATKPLPSSSTDSDTDKDTNFSVIDEFNRWRNHPDLAEAVAAIRALAAVISSSKASTMMQLEIELKNASDTLKAWDTTSISLTAASDLFMRYVTRTSALEFEDFNSAKSRLIERADKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVFEVLKLAAHNKKRFRVFCTEGRPDRTGLRLSNELAKLDVPVKLVIDSAVAYTMDEVDMVIVGADGVVESGGIINMMGTYQIALVAKCMNKPLYVAAESYKFARHYPLDQKDLAPAIRPVDFGVPIPSKVDVECSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00841 356 Pfam Initiation factor 2 subunit family 70 344 IPR000649 GO:0044237
Trre16g00841 356 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 25 356 - -
Trre16g00841 356 FunFam Translation initiation factor eIF-2B subunit alpha 55 157 - -
Trre16g00841 356 Coils Coil 94 114 - -
Trre16g00841 356 SUPERFAMILY NagB/RpiA/CoA transferase-like 72 355 IPR037171 -
Trre16g00841 356 Gene3D - 54 157 IPR042528 -
Trre16g00841 356 FunFam Translation initiation factor eIF-2B subunit alpha 160 356 - -
Trre16g00841 356 Gene3D - 160 356 IPR042529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00841 Trre-Chr16 6395304 6400228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00841 9 356 Eukaryotic Initiation Factors Gene Family AT1G53880 78.652 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00841 K03239 - gmx:102669842 577.4