Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00840 ATGTTGCAGTTTCATCCTCAAGGTGCTTCTAAACAGACTTGTACTGTTCTTGCTGTTACTTCTGCTACAAGTTCTGTTGACCAGAAGCAGAAGCAGCCACAGAATCATCACATATACCCTTTCCCTGAGTTGGTTTCTTCGGGGCGTCTTGAGGTTCAAACTCTCTGCGATCCGGAAAAGGAACAATTTCGTAAAGTTCTTGAATCGTATCAGCCGAGTTTTGTTTACTTACAAGGAGAGCAGTTAGTGAATGAGGAAGTTGGTTCGCTGGTTTGGCAAGGTGTGGAACTATCCATTCCTGAAGATTTATCAGAGCTCTTCGGTACTACATTGCCAACGGTTGTTTATCTAGAAATCCCAAATGGAGAAAGTTTTGCAGAGGCCCTTCGTCTTAAGGGAATCCCGTATGTTGTATTTTGGAAGAATGCCTTTTCTCAATATGCTGCCTGCCATTTTCGTCAAGCATTTTTTTCAGTGGTTCAGAGTTCATGTACACATACATGGGATGCTTTCCACCTTGCACATGCCTCATTCGAGCTTTACTGTGTTCAAAACAGTCAAGTACTTCCTAATGATAGTAATGATGCTGATAGCGATATGGGGCCACACCTTCTTGGTGACTGCCTCAAAATTAATGTTGACCCTCCAAAGATGGGTGAAGAAGATGACGATGATGAAGAAAGTTCCTCAGGCAATCTTCCTTCTATACAGATTCATGATGATGAAGTGAATTTGAGATTTCTCATCTGTGGTGCACCTTCCACTGTTGATGAGTCTTTACTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCTCTTCAGGCAGCTACTTTTTCACGCGGCGTTGTGACCATGCGATGTGATATATCAACCTGCAGTTCTGCACATATCTCACTTCTAGTATCTGGAAGTCCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTTGCGCACAACTCAACAGTGAAGCAAACACAGAGATTATCTCTGAACCTCGCAGATCTGCTTCAATAGCTTGTGGAGCAAATATATTTGAAGTTAGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTCGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTGTAGCCTCTTTTGAGAAAGATGATGCCGAGCGCTTACTTTTCTTCTATCAAAGCTCCGAGAAAGATGGATGTGAAAATGGCAATTTAGTTTTCAGCAATCCCCCTATTTGGTTGAAGCCTCCCCCTCCTACAAGAAAGAGGTGTGAATCAAGCCAAGGGGATAGCCCTGACGTACACGATGGTGTCTTTGCAGGGCAGGGTGCTGTTAAAAATGTAGATGAAGAGGATAAGGATAGGAAAATGGTGAATGGGGTTAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCATGTTCGTCGCCATAGAATGGCACCTTTTCGTGGACCTTCTGACATAAATGGTTTTGGCGGTGCCCATGTTGAGGCTAATGTGCCACTCGTCCCTATGAAGCGTAGTAGTATTGGAACATCATCTGCCACACAGAGAAAATCATTTTCAAGTTCATCTCATTCTAAGCAGGTTATTTCATTGAATCCATTACCGTTGAAGAAACATGGCTGCAGCAGAGGCCCAGTACAGACTTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGCCATAGCCGACTGATTCCCCAAGGAGGGCTTTCCGAGTTCCCTGATGCCATTCTGAATGGCAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGGTTACAAGGGGAGGATTTCACGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGGGAAATTACACATCAACGAATAGAATGACTGGAGTTGGAAATACACTCAAGAGACATTATGAAACTTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGTGGCATATGTGGCGAGTGGGCCCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGGCTGGAATATATATGTCCTCATTGTAGTGTTACGAATTTCAAGAAAAAACAAAGTGTTGCTAATGGGTATTCTCAAGGGTCAATGTCATCACGACCCCTTTGA 2355 0.4331 MLQFHPQGASKQTCTVLAVTSATSSVDQKQKQPQNHHIYPFPELVSSGRLEVQTLCDPEKEQFRKVLESYQPSFVYLQGEQLVNEEVGSLVWQGVELSIPEDLSELFGTTLPTVVYLEIPNGESFAEALRLKGIPYVVFWKNAFSQYAACHFRQAFFSVVQSSCTHTWDAFHLAHASFELYCVQNSQVLPNDSNDADSDMGPHLLGDCLKINVDPPKMGEEDDDDEESSSGNLPSIQIHDDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKYSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSPQACFNDQLLENHIKNEIIEKSQIVCAQLNSEANTEIISEPRRSASIACGANIFEVSMKLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSEKDGCENGNLVFSNPPIWLKPPPPTRKRCESSQGDSPDVHDGVFAGQGAVKNVDEEDKDRKMVNGVSTPLTPARQRLKVSAMRPIPHVRRHRMAPFRGPSDINGFGGAHVEANVPLVPMKRSSIGTSSATQRKSFSSSSHSKQVISLNPLPLKKHGCSRGPVQTCSEEEFLKDVMEFLILRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRPL 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00840 784 ProSiteProfiles ARID domain profile. 598 702 IPR001606 GO:0003677
Trre16g00840 784 Gene3D - 595 701 IPR036431 GO:0003677
Trre16g00840 784 SMART ARID_2 595 698 - -
Trre16g00840 784 Pfam ARID/BRIGHT DNA binding domain 601 698 IPR001606 GO:0003677
Trre16g00840 784 CDD PHD_ARID4_like 708 759 - -
Trre16g00840 784 SUPERFAMILY ARID-like 598 713 IPR036431 GO:0003677
Trre16g00840 784 SMART bright_3 599 703 IPR001606 GO:0003677
Trre16g00840 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 765 IPR013083 -
Trre16g00840 784 SUPERFAMILY FYVE/PHD zinc finger 694 762 IPR011011 -
Trre16g00840 784 CDD ARID 600 698 - -
Trre16g00840 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 781 IPR042293 -
Trre16g00840 784 MobiDBLite consensus disorder prediction 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00840 Trre-Chr16 6385031 6393417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00840 4 773 ARID Transcription Factor Family AT3G43240 60.129 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre16g00840 ARID 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00840 - - gmx:100816540 1336.63