Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00836 ATGGAAATTGGCACATTCCTAGTTTGCCATGGTCTACCATTTCTATTGGTAATTCCAACAATTTTTTTTCTATTGGTATTGACAATAATTTCGAGAAAAATCAATCATATTGAGAAAGAGACATGTAATGAGAAAGAAGAGATTGAGAAAAAGAGTGAGTCTCAATTGAAACAATTTTCTTATTGTGCAATATGTATCGATGATAAACCTATTGAAGAAATGTTCGAAAACCGAAATTGTTCACACTCATTTTGTAAAGATTGTGTTGGAAGTTATCTAGCTGCAAAAATTCAAGAGAATATAGCTATGGTAAAATGTCCTGATCCAAAATGCAATGATATTTTGGAGCCTATTGATTGTATTTCAATTATACCAAAGAATGTGTTTGAAAGATGGGAAACTGCACTTGTTGAGAATTTGGTGTTGGCATCACAAAAGTTTTTTTGTCCTTATAATGATTGTTCAGCTATGTTGGTGAATGATTTAAAGGAAGTTGTGACGGTTTCGGAATGCCCACATTGTCATAGATTGTTTTGCGCACAATGTAAAGTTTCATGGCACGCTGGAGTCGATTGTAGAGAGTTTCGAAGCTTGAAATATGGCGATCAAGGGTGGGAATTAGATCTAAGGGCTATTCAACTTGCTAATAAAAAGACGTGGAAAAAATGTTCAAAATGCAGCTTCTATGTGGGAAAAAGAGGGGGATGTAATCTCATTACATGCAGGTGTGGGCATAAATTTTGCTATGTGTGTGGATCCAAGTGGAAGCCGTCGCATTATGAATGTATTTAA 792 0.3497 MEIGTFLVCHGLPFLLVIPTIFFLLVLTIISRKINHIEKETCNEKEEIEKKSESQLKQFSYCAICIDDKPIEEMFENRNCSHSFCKDCVGSYLAAKIQENIAMVKCPDPKCNDILEPIDCISIIPKNVFERWETALVENLVLASQKFFCPYNDCSAMLVNDLKEVVTVSECPHCHRLFCAQCKVSWHAGVDCREFRSLKYGDQGWELDLRAIQLANKKTWKKCSKCSFYVGKRGGCNLITCRCGHKFCYVCGSKWKPSHYECI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00836 263 CDD Rcat_RBR_unk 220 255 - -
Trre16g00836 263 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 255 IPR031127 GO:0004842|GO:0016567
Trre16g00836 263 ProSiteProfiles TRIAD supradomain profile. 58 263 IPR044066 -
Trre16g00836 263 SUPERFAMILY RING/U-box 209 260 - -
Trre16g00836 263 CDD BRcat_RBR_unk 143 195 - -
Trre16g00836 263 SMART ibrneu5 130 192 IPR002867 GO:0008270
Trre16g00836 263 SMART ibrneu5 203 262 IPR002867 GO:0008270
Trre16g00836 263 Gene3D - 190 263 - -
Trre16g00836 263 SUPERFAMILY RING/U-box 57 139 - -
Trre16g00836 263 ProSitePatterns Zinc finger RING-type signature. 80 89 IPR017907 -
Trre16g00836 263 ProSiteProfiles Zinc finger RING-type profile. 62 110 IPR001841 -
Trre16g00836 263 FunFam RBR-type E3 ubiquitin transferase 57 143 - -
Trre16g00836 263 Pfam IBR domain, a half RING-finger domain 213 262 IPR002867 GO:0008270
Trre16g00836 263 Pfam IBR domain, a half RING-finger domain 131 192 IPR002867 GO:0008270
Trre16g00836 263 SUPERFAMILY RING/U-box 136 196 - -
Trre16g00836 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 144 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00836 Trre-Chr16 6366872 6368000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00836 58 253 C3H Transcription Factor Family AT2G19610 28.571 1.59e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00836 K11975 - gmx:100815626 302.367