Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g00835 | ATGGAAATTGGCACATTCCTAGTTAGCCATGGTCTACCATTTCTATTGGTAATGACAATAATTTCTAGAATAATCAAACAGACTGAGAAAAAGACATGTAATGAGAAAGAAGAGATTGAGAAAGAGAGTGATTCTCAATTGAAACAATTCTATTGTACAATATGTATGGATGATAAACCTATTGAAGAAATGTTCGAAAACCGAAATTGTTCACACTCTTTTTGTGAAGATTGTGTTGGAAGTTATCTAGCTACAAAAATTCAAGAGAATTTAGCAATGGTAAAATGTCCTGATCCAAAATGCAATGGTATTTTGGATCCTTGTGATTGTATTTCAATTATACCAAAGGATGTGTATGAAAGATGGGAAAATGCACTATGTGAGAATTTGGTGTTAGGATCACAAAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGGTGAATGATGGAAATGAAGTTATAACGGTTTCGGAATGTCCACATTGTCATAGATTGTTTTGCGCACAATGTAAAGTTTCATGGCACGCAGGATTCGATTGTAGAGGGTTTCGAAGCTTTGAAAAGGGCAAGCCGTGGTGGGAATCAGATCTACTAGCTGTGCAACTTGCTAAGAAAAATAAATGGAAAAGATGTTCAAAATGCAGCTTCTATGTGGAAAGAAGGGAAGGATGTAATAAAATTTCATGCAGGTGTGGTCATAAATTTTGCTATGTTTGTGGATCGAATTGGAAGCCGTCGCATTATGAATGTAAAATTTGA | 765 | 0.3464 | MEIGTFLVSHGLPFLLVMTIISRIIKQTEKKTCNEKEEIEKESDSQLKQFYCTICMDDKPIEEMFENRNCSHSFCEDCVGSYLATKIQENLAMVKCPDPKCNGILDPCDCISIIPKDVYERWENALCENLVLGSQKFYCPFNDCSAMLVNDGNEVITVSECPHCHRLFCAQCKVSWHAGFDCRGFRSFEKGKPWWESDLLAVQLAKKNKWKRCSKCSFYVERREGCNKISCRCGHKFCYVCGSNWKPSHYECKI | 254 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g00835 | 254 | ProSiteProfiles | TRIAD supradomain profile. | 48 | 254 | IPR044066 | - | |
Trre16g00835 | 254 | CDD | BRcat_RBR_unk | 133 | 182 | - | - | |
Trre16g00835 | 254 | FunFam | RBR-type E3 ubiquitin transferase | 47 | 133 | - | - | |
Trre16g00835 | 254 | Gene3D | - | 180 | 254 | - | - | |
Trre16g00835 | 254 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 33 | 246 | IPR031127 | GO:0004842|GO:0016567 | |
Trre16g00835 | 254 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 133 | IPR013083 | - | |
Trre16g00835 | 254 | SMART | ibrneu5 | 120 | 182 | IPR002867 | GO:0008270 | |
Trre16g00835 | 254 | SMART | ibrneu5 | 192 | 252 | IPR002867 | GO:0008270 | |
Trre16g00835 | 254 | ProSitePatterns | Zinc finger RING-type signature. | 70 | 79 | IPR017907 | - | |
Trre16g00835 | 254 | ProSiteProfiles | Zinc finger RING-type profile. | 52 | 100 | IPR001841 | - | |
Trre16g00835 | 254 | Pfam | IBR domain, a half RING-finger domain | 121 | 182 | IPR002867 | GO:0008270 | |
Trre16g00835 | 254 | Pfam | IBR domain, a half RING-finger domain | 202 | 252 | IPR002867 | GO:0008270 | |
Trre16g00835 | 254 | SUPERFAMILY | RING/U-box | 48 | 129 | - | - | |
Trre16g00835 | 254 | SUPERFAMILY | RING/U-box | 127 | 184 | - | - | |
Trre16g00835 | 254 | SUPERFAMILY | RING/U-box | 196 | 252 | - | - | |
Trre16g00835 | 254 | CDD | Rcat_RBR_unk | 209 | 245 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g00835 | Trre-Chr16 | 6358369 | 6359369 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g00835 | 52 | 243 | C3H Transcription Factor Family | AT2G19610 | 28.641 | 2.60e-18 | 81.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g00835 | K11975 | - | gmx:100815626 | 317.39 |