Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00835 ATGGAAATTGGCACATTCCTAGTTAGCCATGGTCTACCATTTCTATTGGTAATGACAATAATTTCTAGAATAATCAAACAGACTGAGAAAAAGACATGTAATGAGAAAGAAGAGATTGAGAAAGAGAGTGATTCTCAATTGAAACAATTCTATTGTACAATATGTATGGATGATAAACCTATTGAAGAAATGTTCGAAAACCGAAATTGTTCACACTCTTTTTGTGAAGATTGTGTTGGAAGTTATCTAGCTACAAAAATTCAAGAGAATTTAGCAATGGTAAAATGTCCTGATCCAAAATGCAATGGTATTTTGGATCCTTGTGATTGTATTTCAATTATACCAAAGGATGTGTATGAAAGATGGGAAAATGCACTATGTGAGAATTTGGTGTTAGGATCACAAAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGGTGAATGATGGAAATGAAGTTATAACGGTTTCGGAATGTCCACATTGTCATAGATTGTTTTGCGCACAATGTAAAGTTTCATGGCACGCAGGATTCGATTGTAGAGGGTTTCGAAGCTTTGAAAAGGGCAAGCCGTGGTGGGAATCAGATCTACTAGCTGTGCAACTTGCTAAGAAAAATAAATGGAAAAGATGTTCAAAATGCAGCTTCTATGTGGAAAGAAGGGAAGGATGTAATAAAATTTCATGCAGGTGTGGTCATAAATTTTGCTATGTTTGTGGATCGAATTGGAAGCCGTCGCATTATGAATGTAAAATTTGA 765 0.3464 MEIGTFLVSHGLPFLLVMTIISRIIKQTEKKTCNEKEEIEKESDSQLKQFYCTICMDDKPIEEMFENRNCSHSFCEDCVGSYLATKIQENLAMVKCPDPKCNGILDPCDCISIIPKDVYERWENALCENLVLGSQKFYCPFNDCSAMLVNDGNEVITVSECPHCHRLFCAQCKVSWHAGFDCRGFRSFEKGKPWWESDLLAVQLAKKNKWKRCSKCSFYVERREGCNKISCRCGHKFCYVCGSNWKPSHYECKI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00835 254 ProSiteProfiles TRIAD supradomain profile. 48 254 IPR044066 -
Trre16g00835 254 CDD BRcat_RBR_unk 133 182 - -
Trre16g00835 254 FunFam RBR-type E3 ubiquitin transferase 47 133 - -
Trre16g00835 254 Gene3D - 180 254 - -
Trre16g00835 254 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 246 IPR031127 GO:0004842|GO:0016567
Trre16g00835 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 133 IPR013083 -
Trre16g00835 254 SMART ibrneu5 120 182 IPR002867 GO:0008270
Trre16g00835 254 SMART ibrneu5 192 252 IPR002867 GO:0008270
Trre16g00835 254 ProSitePatterns Zinc finger RING-type signature. 70 79 IPR017907 -
Trre16g00835 254 ProSiteProfiles Zinc finger RING-type profile. 52 100 IPR001841 -
Trre16g00835 254 Pfam IBR domain, a half RING-finger domain 121 182 IPR002867 GO:0008270
Trre16g00835 254 Pfam IBR domain, a half RING-finger domain 202 252 IPR002867 GO:0008270
Trre16g00835 254 SUPERFAMILY RING/U-box 48 129 - -
Trre16g00835 254 SUPERFAMILY RING/U-box 127 184 - -
Trre16g00835 254 SUPERFAMILY RING/U-box 196 252 - -
Trre16g00835 254 CDD Rcat_RBR_unk 209 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00835 Trre-Chr16 6358369 6359369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00835 52 243 C3H Transcription Factor Family AT2G19610 28.641 2.60e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00835 K11975 - gmx:100815626 317.39