Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00833 ATGTGTGGTGGTGCTATTATTTCCGACTTCATTCCAGCTGCGGCGGCGGTGGGTGGTTCCCGCCGTGTCACTGCTGATATCTTGTGGCCTAATTTGAGGAAAACTGGTTCTAAGAAATCATCTTTTTTGCTTGACGATGATTTTGAAGCTGGTTTCAGAGAGTTTAAGGATGATTCTGATTTCGACGAAGACGAGGATGAAGATGACGATGAAGGGTTGTTGGTCGGTGTCAAAGGTTTTACCTTTGCTGCTTCTAACAACAAATCTTCAAGGAACTTCTCTCGTGGCTCGGCTGGTGCAAAATCTGTGGCATCAAAATCAAATGAGCAACAAGCTGTAAAGGAATCGAAGAGAAAGAGGAAGAATCAGTATAGGGGTATCCGTCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGAGTCCGTGTTTGGCTTGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCTAGGAGAATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCCGATGAGGCTCCAAATGCTTCCTCAAAACGTCTCAAGACAAATCCTGATAACCAGCTGTTGAACAAAAATCTGAACTCTTTCAAGCCAAACGGAAACAACAAAATGTTCAATTTCGGCGAGAATATGGAGAACTACTATTCTCCTATGGATCAGGTTGAACAGAAACCATTGGTTAACAACCAATATGCTGCTGAAATCGGAACCTTCGCTGGAAACGGAGCTCAGCTTGCACCTGCTGATGTTACTGCTTATTTCAGTTCTGAGCATTCAAGCAATTCGTTTGATTATTCTGATTTATGTTGGGGAGAACAAGGCCCGAAAACCCCTGAGATTTCCTCGGTGTTTTCTGCTCCTCTCGAAGCTGAACCTCAGTTGAACATGCAGTCTAACAACTCTGAGGATATGCTACCTATGCAAGCTGAATCTGCAAAGACACTCTCTGAGGAACTCGCAGATATTGAATCCCAGCTGAAATACTTCGAGAACTCATTTGATGATAACTGGAGTGATGCTTCACTCGCGTCTTTGCTCGGTGCTGATGTAACTCAGGATGCTGGAAACACAATGAACCTTTGGAGCTTTGATGACATGCCTACCATCGCAGGCGGAGTTTTCTGA 1158 0.4508 MCGGAIISDFIPAAAAVGGSRRVTADILWPNLRKTGSKKSSFLLDDDFEAGFREFKDDSDFDEDEDEDDDEGLLVGVKGFTFAASNNKSSRNFSRGSAGAKSVASKSNEQQAVKESKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEAPNASSKRLKTNPDNQLLNKNLNSFKPNGNNKMFNFGENMENYYSPMDQVEQKPLVNNQYAAEIGTFAGNGAQLAPADVTAYFSSEHSSNSFDYSDLCWGEQGPKTPEISSVFSAPLEAEPQLNMQSNNSEDMLPMQAESAKTLSEELADIESQLKYFENSFDDNWSDASLASLLGADVTQDAGNTMNLWSFDDMPTIAGGVF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00833 385 MobiDBLite consensus disorder prediction 89 110 - -
Trre16g00833 385 MobiDBLite consensus disorder prediction 179 206 - -
Trre16g00833 385 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Trre16g00833 385 PANTHER DNA-BINDING DOMAIN 91 289 IPR044808 GO:0003700|GO:0009873
Trre16g00833 385 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Trre16g00833 385 Coils Coil 323 343 - -
Trre16g00833 385 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Trre16g00833 385 MobiDBLite consensus disorder prediction 89 127 - -
Trre16g00833 385 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Trre16g00833 385 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Trre16g00833 385 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Trre16g00833 385 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Trre16g00833 385 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Trre16g00833 385 MobiDBLite consensus disorder prediction 187 206 - -
Trre16g00833 385 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00833 Trre-Chr16 6326575 6328908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00833 1 385 AP2-EREBP Transcription Factor Family AT3G14230 42.506 6.64e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g00833 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00833 K09286 - gmx:100818646 446.047