Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00819 ATGGGAGCTAGAGAAAGCAAGTTAAGGAAATGGGTTAGTAGTGGAAGTGGTCAATACAAACGCATACAAGGTCCTATGTTGTTGGCACCAAAAGGCTATGTTCCAATATGTGTTGGAACAAATGAAGACACTTGTAGGAAATTTATGGTTCACACAAGAGCACTTGGTGATGCATTTTTTTGTGAATTGTTGGGTAAGTCTGAGGAGGTATTTGGATTTAGAAATGAAGGGGTTTTGAGGATTCCATTTGAAGCACAAGATTTTGAGGAGAGGTTTATTGGAAGGTCCAACACAAAGATTAAAATTAAGAGAATGGTAATACCAACTTGA 330 0.3788 MGARESKLRKWVSSGSGQYKRIQGPMLLAPKGYVPICVGTNEDTCRKFMVHTRALGDAFFCELLGKSEEVFGFRNEGVLRIPFEAQDFEERFIGRSNTKIKIKRMVIPT 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00819 109 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 16 90 IPR003676 GO:0009733
Trre16g00819 109 Pfam Auxin responsive protein 28 90 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00819 Trre-Chr16 6219963 6220292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00819 30 89 Calmodulin-binding Proteins AT2G24400 41.667 2.55e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00819 K14488 - gmx:102666083 146.747