Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00817 ATGGCTAATGAAGGAAACAAAGGCAATGATTTCTATGCAGTTTTGGGATTGAACAAAGAATGCACTGATTCAGATTTAAGGAATGCTTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCTGCTTCAGGGAATATGAAGTTTGTGGAAGACGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTATTCTGTTCTATCTGACGCGAATAAGAGGTTAATGTACGACGTTGGAGTTTACGACAGTGATGATGACGAAAATGGTATGGGAGACTTTTTGAATGAAATGGTTACAATGATGAGCCAAACTAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTCGAAGATATGTTTCAAGCGGACATTGGATTAAATGGAAGCACTTCTCTTAATGCCTCTAGTTGCTCGACTTCATCGACTTTCAAGACGTATAGTGAAAGTTCTAATTCTAATAAACGCAATTCCACTCAGATGAATTATGGAAAAACAGAGGATTCTTCTAGCTTTGATGCCAATTACCAGAACTTTTGTTTTGGGACAGGCAAAGCACCTTCAAGAAGATGTGGAGAAGGAAAAAGGGGGAATTCAAGAAGGAAGAGGTAG 627 0.3876 MANEGNKGNDFYAVLGLNKECTDSDLRNAYKKLALKWHPDRCSASGNMKFVEDAKKKFQAIQEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTKSNENGEESFEELQQLFEDMFQADIGLNGSTSLNASSCSTSSTFKTYSESSNSNKRNSTQMNYGKTEDSSSFDANYQNFCFGTGKAPSRRCGEGKRGNSRRKR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00817 208 CDD DnaJ 10 70 IPR001623 -
Trre16g00817 208 PRINTS DnaJ domain signature 53 73 IPR001623 -
Trre16g00817 208 PRINTS DnaJ domain signature 73 92 IPR001623 -
Trre16g00817 208 PRINTS DnaJ domain signature 12 30 IPR001623 -
Trre16g00817 208 PRINTS DnaJ domain signature 30 45 IPR001623 -
Trre16g00817 208 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Trre16g00817 208 MobiDBLite consensus disorder prediction 140 208 - -
Trre16g00817 208 SUPERFAMILY Chaperone J-domain 7 80 IPR036869 -
Trre16g00817 208 PANTHER PUTATIVE, EXPRESSED-RELATED 2 184 - -
Trre16g00817 208 MobiDBLite consensus disorder prediction 140 187 - -
Trre16g00817 208 Pfam DnaJ domain 10 78 IPR001623 -
Trre16g00817 208 Gene3D DnaJ domain 7 136 IPR036869 -
Trre16g00817 208 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Trre16g00817 208 SMART dnaj_3 9 73 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00817 Trre-Chr16 6204058 6209141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00817 12 78 C2H2 Transcription Factor Family AT1G74250 40.299 4.60e-11 59.7