Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00816 ATGGCTAATGAAGGAAACAAAGGCAATGATTTCTATGCAGTTTTGGGATTGAACAAAGAATGCACTGATTCAGATTTAAGGAATGCTTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCTGCTTCAGGGAATATGAAGTTTGTGGAAGACGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTATTCTGTTCTATCTGACGCGAATAAGAGGTTAATGTACGACGTTGGAGTTTACGACAGTGATGATGACGAAAATGGTATGGGAGACTTTTTGAATGAAATGGTTACAATGATGAGCCAAACTAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTCGAAGATATGTTTCAAGCGGACATTGGATTAAATGGAAGCACTTCTCTTAATGCCTCTAGTTGCTCGACTTCATCGACTTTCAAGACGTATAGTGAAAGTTCTAATTCTAATAAACGCAATTCCACTCAGATGAATTATGGAAAAACAGAGGATTCTTCTAGCTTTGATGCCAATTACCAGAACTTTTGTTTTGGGGCAAAGCACCTTCAAGAAGATGTGGAGAAGGAAAAAGGGGGAATTCAAGAAGGAAGAGGTAGTAGTAGGCAAAGAAAAGGCAGAAAACAAAAGACCTCACATGGCCATGATGTTTCATCTAGTGACCATCATGGAATTTCTGCTAATTGA 711 0.3868 MANEGNKGNDFYAVLGLNKECTDSDLRNAYKKLALKWHPDRCSASGNMKFVEDAKKKFQAIQEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTKSNENGEESFEELQQLFEDMFQADIGLNGSTSLNASSCSTSSTFKTYSESSNSNKRNSTQMNYGKTEDSSSFDANYQNFCFGAKHLQEDVEKEKGGIQEGRGSSRQRKGRKQKTSHGHDVSSSDHHGISAN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00816 236 CDD DnaJ 10 70 IPR001623 -
Trre16g00816 236 PRINTS DnaJ domain signature 73 92 IPR001623 -
Trre16g00816 236 PRINTS DnaJ domain signature 30 45 IPR001623 -
Trre16g00816 236 PRINTS DnaJ domain signature 12 30 IPR001623 -
Trre16g00816 236 PRINTS DnaJ domain signature 53 73 IPR001623 -
Trre16g00816 236 MobiDBLite consensus disorder prediction 193 210 - -
Trre16g00816 236 Pfam DnaJ domain 10 78 IPR001623 -
Trre16g00816 236 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Trre16g00816 236 SUPERFAMILY Chaperone J-domain 8 80 IPR036869 -
Trre16g00816 236 Gene3D DnaJ domain 7 136 IPR036869 -
Trre16g00816 236 MobiDBLite consensus disorder prediction 193 236 - -
Trre16g00816 236 PANTHER PUTATIVE, EXPRESSED-RELATED 2 194 - -
Trre16g00816 236 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Trre16g00816 236 SMART dnaj_3 9 73 IPR001623 -
Trre16g00816 236 MobiDBLite consensus disorder prediction 140 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00816 Trre-Chr16 6203970 6209141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00816 12 78 C2H2 Transcription Factor Family AT1G74250 40.299 1.09e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00816 - - lang:109338829 347.821