Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00813 ATGGAAGACGATGACGAGATCCATTCCGATCCATCACCGTTGAGCGGATCTCCGGTGTCTTCACCGGGAGCAATTGGTCGGATTTCGGTGACGGTTGCTGCACCGGCGCCGGAATCTCATCCGGCGATGAACAGCTATGCATTAGCGCTTCCGATTCAGAATCAGGTAAGAGGAAACAACGGTGGAGGGAGGGAGGATTGTTGGAGCGAAGGCGCAACGGCGGTTCTGATTGAAGCGTGGGGAGAGAGGTATATGGAATTGAGCAGAGGGAATCTGAAGCAAAAGCATTGGAAAGAGGTGGCGGAGATCGTTAACGGAAGAGAAGATTATATGAAAACGCCGAAAACCGATGTTCAGTGCAAAAATCGGATCGATACAGTTAAGAAGAAGTATAAATCAGAGAAAGCTAAGATCGCCACCGAAGGCGGCATCACAACCAGTAAATGGCCGTTTTATGACCGATTAGATCAGTTGATCGGTCCAACCGCTAAGATCACCGGTAGCACATCCGCCGGAAACAGTAATTTACCACCGCAAAAAGTTCCGTTAGGAATTCCGGTCGGCCTTCGTGCCGGTGCTGGTGCCAATCAGTTTAATTCACAAAAGAAAAATCAAAAACCACAGCCACAGCCGCAGCCGCAGCCGCAGTTGAATTATCAGAAAGTTCAGCTTCGACCGCGAGTTCAGGCTGTGGATTCTGATAATTCATCAGAGAGAGAAGCGTTGTCGCCAGTGTCAAGCGACAGTTTACCACCGCCGGATAGTCAGGAGAGGAAGAGATCGAAGGTGATGAATTCGAATCCTGTGAAAGGAACAGAAGGAAGAAAGAAAGGTTGGGGAAGTGCTGTGAGGGAATTGACTCAAGCAATTGTGAAATTTGGGGAGGCTTATGAACAAGCAGAGACATCGAAGTTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCTAGAGACTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAAACACAGGTAGAGATTTCACAGCTTAAGCTTGGAAGAAAAAATGTTAATGTTAATGGCATTGAAGATCGCTTAACACAATCGAAGATCATCCACTTTCATTGTTCCTCTTTGCATTGGATCGTTTCACATTCAAAAATTTTTGCTGATTATGATTGGTTTTGTTCAAAAAGGATGGTGAAACTTGAAATGATCTGA 1191 0.4635 MEDDDEIHSDPSPLSGSPVSSPGAIGRISVTVAAPAPESHPAMNSYALALPIQNQVRGNNGGGREDCWSEGATAVLIEAWGERYMELSRGNLKQKHWKEVAEIVNGREDYMKTPKTDVQCKNRIDTVKKKYKSEKAKIATEGGITTSKWPFYDRLDQLIGPTAKITGSTSAGNSNLPPQKVPLGIPVGLRAGAGANQFNSQKKNQKPQPQPQPQPQLNYQKVQLRPRVQAVDSDNSSEREALSPVSSDSLPPPDSQERKRSKVMNSNPVKGTEGRKKGWGSAVRELTQAIVKFGEAYEQAETSKLQQVVEMEKQRMKFARDLELQRMQFFMKTQVEISQLKLGRKNVNVNGIEDRLTQSKIIHFHCSSLHWIVSHSKIFADYDWFCSKRMVKLEMI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00813 396 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 43 342 IPR044823 -
Trre16g00813 396 MobiDBLite consensus disorder prediction 166 278 - -
Trre16g00813 396 FunFam trihelix transcription factor ASIL2 68 133 - -
Trre16g00813 396 Gene3D - 68 133 - -
Trre16g00813 396 MobiDBLite consensus disorder prediction 215 252 - -
Trre16g00813 396 Pfam Myb/SANT-like DNA-binding domain 65 158 IPR044822 -
Trre16g00813 396 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00813 Trre-Chr16 6185321 6192381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00813 1 341 Trihelix Transcription Factor Family AT3G14180 47.268 2.63e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre16g00813 Myb_DNA-bind_4 1.5e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00813 - - cam:101508093 456.832