Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00811 ATGGCTGATTCTTCGTTTGAGATAGACAATCCGAGACGACATTATCCAAATCCAGTGAGTTATCAGAGTGTCTCCGGCTCTAGTTCTTTCATACATTCCACTTCTCGAAGCAACGCAACTCCAAGAACTAGAAGAACTCGTCGCAACAAAATTCCATCCACACCCTTTGCCACAGATGACGACCGTTCATGGCAAGGAGAAGTTTCGTGGAAGTTTGAACCAACTGGGTTTCGTGAACATAGCACAAACTTCGGTTATGCTCTTAGTCCATGGCCAACCAACTCCCCCTTTGATCGTAGCCATGTGTTTCGCCAATCGGCTAATGACTATTACCTTTCGAGAATAGGCGGTTTACGAGACCTTACAAATTCATCAAATGATCATTCTTCCTATGGAAGAGTTGAACTTAGGAGCCATGTTGCTAGGGCCAGCAATGATCATAGTTACTTTGATCAATATAGTGGATTCTCTAAATTAGGAATCATCAAAGAAGGAATTAGTAGCGGAAGTCGTAACATTAATCATAAGACTAGTCCATTAGCCGAGGAAGACGAGCTCAGTGCGATCGATTATAGTATAACAGATGAACATGTTATGTCACCTTATGGAAATGATGATCATTTTCTTGATGAAATGTCATATGTTAAACATGATCATAAAGTACCATCATATGGTAACAAATCCCCTAGCCAAATTTATGGTGGTGGTGGTGGTTATAGTCAATATGAGAGTAAAATGGCATCAGGATTTGATGATGAAGGTGATGAGGATATAGATGAGGATGATGATGATGATGTTGTAGGTCCTCCAAAGACAGTTGGATTGTTTAGCTTGTTTAGGTATACAAGAAAGTGGGATTGGTTACTTGTGTTTTTTGGTTGTTTAGGGGCTCTTATAAATGGAGGATCACTTCCTTTTTATTCTTATCTTTTTGGTAATTTGGTTAATAAGCTTTCAAGAGAAGCAAAAGATAACAAATCTCAGCTGTTGAATGATGTAGACCAGATATGTGTATTTATGACTGGCTTAGCTGCAGTTGTGATAGTTGGAGCATATATGGAGATCACATGTTGGAGGTTAGTAGGGGAGAGATCTGCTCAAAGAATTAGAACTGAGTATCTAAGAGCAATCCTTAGACAAGACATAACTTTTTTTGATACAGAAATTAATACTGGTGATATTATGCATGGTATTGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCTCACTTCATTCATCATATATTTACATTCATATGTGGATATGCAGTTGGATTTAGAAGATCATGGAAAGTTTCATTGGTTGTATTCTCAGTCACTCCATTAACAATGTTCTGTGGTATGGCTTACAAAGCACTTTATGGTGGTCTAGCTGCAAAAGAAGAAGCTTCTTATAGGAAAGCAGGAAGCATTGCTGAGCAGGCAATAAGTTCAATTAGGACAGTATTTTCATTTGTTGCTGAAAGCCAATTGGTTGAAAAATATTCTGATCTACTTCAAAAATCAGCTCCAGTTGGAGCTAAACTTGGTTTTGCTAAAGGTGCTGGAATGGGTGTTATATACTTAGTAACTTATTCAACATGGGCTTTAGCTTTTTGGTATGGTTCTATCTTAATTGCTAAGGGTGAACTTGATGGTGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGTGGAAGAGGCTTGGCGCTAGCACTTTCATATTTTGCACAATTTGCGCAAGGTACTGTTGCAGCAAGCCGTGTATTCTATGTTATAGAGAGAATTCCTGAGATTGATCCTTATAATCCTGAGGGTAGGAAACTTTCATCTGTTCGTGGAAGGATCGAGTTAAAGAATGTTAGTTTCGCATATCCATCTCGTCCTGATTCACTTATACTTAACTCCATAAACTTGGTATTTCCGTCTTCAAAAACTTTGGCATTGGTTGGTGCAAGTGGAGGTGGAAAATCAACTATCTTTGCTCTCATAGAAAGGTTTTATGACCCTATAGAAGGGATTATTACCTTGGATGGTCATGATTTAAGGACACTTCAAGTGAAGTGGTTAAGGGATCAAATTGGGATGGTTGGTCAAGAGCCAATTCTGTTCGCTTCATCTATACTTGAAAATGTGATGATGGGGAAAGATAATGCCACAAAGGAAGAAGCAATTTCTGCTTGTATTGCTGCTGATGCTCACAATTTCATATCTAAGCTGCCACTGCGTTACGACACTCAGGCTGGTGATAGAGGTACAAAACTTTCAGGAGGTCAAAAGCAAAGAATTGCATTGGCTAGAGCAATGATAAAAAATCCTAAAATTCTTATTTTAGATGAACCGACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCAGTTCAAAGGGCCATTGACAAGATTTCTGCAGGCAGAACAACCATTGTCATTGCTCACAGGATAGCAACAGTGAAGAATGCTGATGCCATTGTAGTACTTGAACATGGTTCTGTCGCCGAGATTGGTGATCATCGACAGCTTATGGCGAAAACCGGAGCTTACTACAACCTTGTCAAGCTTGCAACTGAATCCATTTCAAAACCTCTTCCATTAGAAGAAGGCATGCAAAAAACCAATGATTTGTCGTCCATCAATAACAAATATGCTCCTGATATAGCAAAATCAAGTTATCTAGTCGATATCGATTCAATGCAGGATGAGGAACAAGATGATATTGAAGACAAAAAATATAAAAAGCCAAGAAATTATAGATTTTCTGAGGTATGGAAATTGCAAAAGCCGGAGTTTATGATGCTGATTTCAGGCCTTGTTTTAGGCATGTTTGCTGGTGCTGTTCTGTCTCTTTTTCCATTAGTTTTAGGAATATCCCTTGGAGTATATTTTGGCAATGACACTTCAAAAATGAAAAGAGATGTAGGGTACCTTTGTTTAGTACTTGTCGGCCTTGGATTCGGTTGCATCATTTCTATGACAGGACAACAAGGTTTATGTGGTTGGGCAGGTTCAAAGCTAACACATAGGGTTAGAAACCTTTTGTTTCAATCTATATTGAGACAAGAACCTGGATGGTTTGATTTTGACGAAAACTCCACCGGTGTATTGGTGTCACTGCTCTCAAGAGATGCCGTCAGTTTTCGTTCGGTACTTGGCGACAGATTCTCAGTACTTCTTATGGGATTGAGTTCTGCCGCTGTTGGACTCGGCGTGTCCTTTGCCTTTAATGTGAAACTAACCCTTGTTGCAGCTGCTGTAACACCTTTAACCCTTGGTGCAAGTTACATAAACTTGATCATAAACATTGGTCCGAAAATCAATAACGATTCTTATGCAAGAGCTAGCAATATTGCTTCTGGTGCAGTTTCAAATATAAGGACAGTTGCTACATTTTCTGCTCAGGAACAGATAGTTAAATCTTTTGATAATGCCTTATCAGAACCTAGAAAAAAATCACTAAAAAGTTCACAGCTTCAAGGTTTTGTATTTGGACTCTTCCAAGGTGCAATGTATGCAGCATACACCTTAACTCTTTGGTTTGGTGCATACCTTGTAAAAAATAACCAAGGAGAATTTGAAGATGTTTATAAGATTTTTCTCATTCTTGTTTTGAGTTCATTTTCTGTTGGTCAACTAGCTGGTTTAGCACCTGATACTTCTATGGCTTCAACATCAATTCCTGCAGTTCAAGATGTTATAAACAGAAGGCCATTGATAGGAAATGATGGAAGAAAAACTAGGAAAGTTGATAGATCAAAGGCTTTTAAAATAGAATTCAAAATGGTAACATTTGCTTATCCTTCAAGGCCTGAGATAACTGTGCTGAGGAATTTCTGTTTGAAGGTTAAAGGTGGAAGTACAGTGGCTTTGGTAGGACCAAGTGGATCAGGAAAATCAACAGTTGTGTGGTTGACACAGAGATTCTATGATCCCGATCAAGGAAATGTTATGATGAGTGGTGTTGATTTGAGGGAGATTGATGTGAAATGGTTGAGGAGACAAATTGGTTTGGTTGGTCAAGAACCTGCACTTTTTGCTGGGAGCATAAGGGAAAATATTGCATTTGGAAACCAAAGTGCTTCTTGGGCTGAAATTGAAGCTGCTGCAATGGAAGCTTACATTCACAAGTTCATTAGTGGACTTCCTCAGGGTTATGAAACTCAGGTTGGTGAAAGTGGGGTCCAATTATCAGGTGGACAAAAACAAAGGATAGCTATAGCAAGGGCAATATTGAAGAAATCAAAGGTGCTTCTACTTGATGAAGCAAGCAGTGCATTGGACTTAGAATCAGAAAAACACATCCAAGAAGCTCTTAAGAATGTTTCCAAAGAAGCAACAACTATAATAGTTGCACATCGTCTTTCGACAATAAGAGAAGCTGATAAAATTGCAGTTATGAGAAATGGAGAAGTAGTTGAGTATGGTAGCCATGACACACTTATTTCTTCCAATCAAAATGGTTTGTATGCTAGCCTTGTTAGAGCTGAGACAGAAGCAAATGCATTTGCTTGA 4500 0.3884 MADSSFEIDNPRRHYPNPVSYQSVSGSSSFIHSTSRSNATPRTRRTRRNKIPSTPFATDDDRSWQGEVSWKFEPTGFREHSTNFGYALSPWPTNSPFDRSHVFRQSANDYYLSRIGGLRDLTNSSNDHSSYGRVELRSHVARASNDHSYFDQYSGFSKLGIIKEGISSGSRNINHKTSPLAEEDELSAIDYSITDEHVMSPYGNDDHFLDEMSYVKHDHKVPSYGNKSPSQIYGGGGGYSQYESKMASGFDDEGDEDIDEDDDDDVVGPPKTVGLFSLFRYTRKWDWLLVFFGCLGALINGGSLPFYSYLFGNLVNKLSREAKDNKSQLLNDVDQICVFMTGLAAVVIVGAYMEITCWRLVGERSAQRIRTEYLRAILRQDITFFDTEINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYAVGFRRSWKVSLVVFSVTPLTMFCGMAYKALYGGLAAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLVEKYSDLLQKSAPVGAKLGFAKGAGMGVIYLVTYSTWALAFWYGSILIAKGELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYVIERIPEIDPYNPEGRKLSSVRGRIELKNVSFAYPSRPDSLILNSINLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFASSILENVMMGKDNATKEEAISACIAADAHNFISKLPLRYDTQAGDRGTKLSGGQKQRIALARAMIKNPKILILDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNADAIVVLEHGSVAEIGDHRQLMAKTGAYYNLVKLATESISKPLPLEEGMQKTNDLSSINNKYAPDIAKSSYLVDIDSMQDEEQDDIEDKKYKKPRNYRFSEVWKLQKPEFMMLISGLVLGMFAGAVLSLFPLVLGISLGVYFGNDTSKMKRDVGYLCLVLVGLGFGCIISMTGQQGLCGWAGSKLTHRVRNLLFQSILRQEPGWFDFDENSTGVLVSLLSRDAVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNVKLTLVAAAVTPLTLGASYINLIINIGPKINNDSYARASNIASGAVSNIRTVATFSAQEQIVKSFDNALSEPRKKSLKSSQLQGFVFGLFQGAMYAAYTLTLWFGAYLVKNNQGEFEDVYKIFLILVLSSFSVGQLAGLAPDTSMASTSIPAVQDVINRRPLIGNDGRKTRKVDRSKAFKIEFKMVTFAYPSRPEITVLRNFCLKVKGGSTVALVGPSGSGKSTVVWLTQRFYDPDQGNVMMSGVDLREIDVKWLRRQIGLVGQEPALFAGSIRENIAFGNQSASWAEIEAAAMEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLESEKHIQEALKNVSKEATTIIVAHRLSTIREADKIAVMRNGEVVEYGSHDTLISSNQNGLYASLVRAETEANAFA 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00811 1499 CDD ABC_6TM_Pgp_ABCB1_D2_like 920 1235 - -
Trre16g00811 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 933 1217 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00811 1499 MobiDBLite consensus disorder prediction 246 265 - -
Trre16g00811 1499 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1104 1244 - -
Trre16g00811 1499 SMART AAA_5 1280 1466 IPR003593 GO:0016887
Trre16g00811 1499 SMART AAA_5 642 828 IPR003593 GO:0016887
Trre16g00811 1499 CDD ABC_MTABC3_MDL1_MDL2 1253 1491 - -
Trre16g00811 1499 CDD ABC_6TM_Pgp_ABCB1_D1_like 291 588 - -
Trre16g00811 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 851 IPR027417 -
Trre16g00811 1499 CDD ABC_MTABC3_MDL1_MDL2 615 852 - -
Trre16g00811 1499 MobiDBLite consensus disorder prediction 250 265 - -
Trre16g00811 1499 SUPERFAMILY ABC transporter transmembrane region 919 1233 IPR036640 GO:0005524|GO:0016020
Trre16g00811 1499 MobiDBLite consensus disorder prediction 16 40 - -
Trre16g00811 1499 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524|GO:0016887
Trre16g00811 1499 Gene3D ABC transporter type 1, transmembrane domain 243 330 IPR036640 GO:0005524|GO:0016020
Trre16g00811 1499 Pfam ABC transporter 633 782 IPR003439 GO:0005524
Trre16g00811 1499 Pfam ABC transporter 1271 1419 IPR003439 GO:0005524
Trre16g00811 1499 MobiDBLite consensus disorder prediction 1 62 - -
Trre16g00811 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00811 1499 PANTHER ABC TRANSPORTER B FAMILY 264 988 IPR039421 -
Trre16g00811 1499 Gene3D - 1246 1498 IPR027417 -
Trre16g00811 1499 Pfam ABC transporter transmembrane region 931 1201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00811 1499 Pfam ABC transporter transmembrane region 290 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00811 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1250 1490 IPR027417 -
Trre16g00811 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1253 1489 IPR003439 GO:0005524
Trre16g00811 1499 Gene3D ABC transporter type 1, transmembrane domain 338 1221 IPR036640 GO:0005524|GO:0016020
Trre16g00811 1499 Gene3D - 613 878 IPR027417 -
Trre16g00811 1499 ProSitePatterns ABC transporters family signature. 1392 1406 IPR017871 GO:0005524|GO:0016887
Trre16g00811 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 851 IPR003439 GO:0005524
Trre16g00811 1499 FunFam ABC transporter B family member 1 605 853 - -
Trre16g00811 1499 FunFam ABC transporter B family member 1 1242 1493 - -
Trre16g00811 1499 SUPERFAMILY ABC transporter transmembrane region 277 600 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00811 Trre-Chr16 6167829 6174605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00811 903 1499 Calmodulin-binding Proteins AT2G36910 36.982 7.35e-107 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00811 K05658 - gmx:100816700 2236.84