Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00805 ATGGCAACCAAAGAAGATTCATCAATGGAGTTTCACGAAATCATCATCAAAAGTGAAGGATCAAACCCAAATTCAGAATGGGACGATTCAGAAGAAGATCCTGATTACGACATGCTGGAAGAAACTCACCGTAGCTTCTCTAATCTCTCACTCAAAAATAAGTCAAAAAAGCGCATAGTTGAAGGTAAGGGTATGGATACTGCGATCAACTCAGAAGTGTTGGAGATGAATACACCTTCTGTTGATGGTGATAGTTTTGAAAAAGTTCAGAAAATAATAAAGGCTGGACTGCTAGAGAAATTGAAAGTGGATGAATGCAAAATTTATTTGAAGAAGAATGGTCTGAGGCTAACTGGGAATAAGGACACACTTATCCAGCGTATAAAGGAGCATCAAGAGATTATAAATGGTGGAGGGGAGAAAAAGTATCCGCCTCATAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACCGGTGATGTTGTTTTGTTTGAGCAAAATGTTTATGAAATGTTCAACATAGCATCCAGGAGTGGCGGCGGTCCACCGTGTGGCAAAAGGACTGTTGCAGGCCGCATTGTGAAAGAAAGCTATGGTGCTGCCAAGCAACAGCATACATTTACGATTGAAGTGCTCTGGAGCAAGGGAGAAAAACCTCTCCCTCCCCTTCACCCCCTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGACAAAGGCAAAAACTGTTGATGGAAAAGCATTCTCGGGGATCCGTTGCTAGGGCAGATAGGGAAGCAAGGATACAGGAAAAGGAGATGAGAAAATCAATGAAAGAAAATAGGATCTCAAAGAAGGATTCAGCAAAGAACAAATGTCAATCACATTCATCCATTATAAGGCCACAAATTCAACCTCAAGAAACAACAAATGTACTCATTACTCGACCATCTGCAATTGTAAATAATCCAGCAGCTGTAACTGAACAGCATGTTCGATCTATTGATTCTCGAGCTGTCACAATGGGATCCGACCAGTTCAGAAATTCAGGAAAATCGTCTTTTAATTCAAACCATTATTATGCTGACTACAATTACAGAGACAAACCAACGACTGTTGAGAGATACCATCCTTCCATTGTTGAGACAAACAATTTTGCAGAGAGAACTTCTTATCCAAGGAAGCCTTTGTCAAGTGCAAATCACTTTGTTCCGCATTTTACAAATGCAAATCATATTCATACAGTGATCCCAAACCGAGAACGCTATCAGCAAAAACAGTTTTGTAGACATTTTGTGCGTGGAAGATGTCATTTTGGAGATAACTGCAAATTCTTACATGGTGAGAGAGACTAA 1362 0.4016 MATKEDSSMEFHEIIIKSEGSNPNSEWDDSEEDPDYDMLEETHRSFSNLSLKNKSKKRIVEGKGMDTAINSEVLEMNTPSVDGDSFEKVQKIIKAGLLEKLKVDECKIYLKKNGLRLTGNKDTLIQRIKEHQEIINGGGEKKYPPHSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSGGGPPCGKRTVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQKWEDEGQRQKLLMEKHSRGSVARADREARIQEKEMRKSMKENRISKKDSAKNKCQSHSSIIRPQIQPQETTNVLITRPSAIVNNPAAVTEQHVRSIDSRAVTMGSDQFRNSGKSSFNSNHYYADYNYRDKPTTVERYHPSIVETNNFAERTSYPRKPLSSANHFVPHFTNANHIHTVIPNRERYQQKQFCRHFVRGRCHFGDNCKFLHGERD 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00805 453 Coils Coil 262 282 - -
Trre16g00805 453 MobiDBLite consensus disorder prediction 275 299 - -
Trre16g00805 453 Pfam SAP domain 98 131 IPR003034 -
Trre16g00805 453 Pfam CCCH-type zinc finger 431 450 IPR041367 -
Trre16g00805 453 Gene3D SAP domain 87 144 IPR036361 -
Trre16g00805 453 SUPERFAMILY CCCH zinc finger 426 450 IPR036855 GO:0046872
Trre16g00805 453 PANTHER SAP DOMAIN-CONTAINING PROTEIN 12 329 - -
Trre16g00805 453 Gene3D - 417 453 - -
Trre16g00805 453 SMART c3hfinal6 426 451 IPR000571 GO:0046872
Trre16g00805 453 SUPERFAMILY SAP domain 87 132 IPR036361 -
Trre16g00805 453 ProSiteProfiles Zinc finger C3H1-type profile. 425 452 IPR000571 GO:0046872
Trre16g00805 453 MobiDBLite consensus disorder prediction 1 35 - -
Trre16g00805 453 ProSiteProfiles SAP motif profile. 98 132 IPR003034 -
Trre16g00805 453 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00805 Trre-Chr16 6149125 6152102 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g00805 SAP 1.2e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00805 - - gmx:100815642 534.258