Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00804 ATGACAAATTGCTGTATAAGGTACATAGCTGCTTTTGTGTTGGTCGCTCCCGTGGTAATAATACCAAATGATTTTGCTAGAGTCCTTTATTTTGCTTTCATATTGGTATTGTGGCATAATTGTATAAACCCTGATAGATCGGAAATAGAAGAAAACGAAAGGATACAAGAATTGCAACCTATTACTAGGAGTGTGTGGTCTATGAGGGAGCCTTACAGACCAAATTCACAAGTCAATACATCTTTTGGCACAATCGCGGAGATTGCTAGGTTGGCGATAAGAGCATTGCCTCCTGTTAAAAGTTTTGATGGTGAAGAAACTGTGGAATGTCCTATTTGCTTGGAAGAGTTCAACAAAGGAGAGTTGATTCAATCTTTTGGAGTCTGCACCCATGAATTTCATACATCCTGTCTTAATTCTTGGCTGCGGGGAGGAAAAACTACTTGTCCGGTTTGTCGCCAAGTTTTGTTGCCTAACCATTAG 483 0.3996 MTNCCIRYIAAFVLVAPVVIIPNDFARVLYFAFILVLWHNCINPDRSEIEENERIQELQPITRSVWSMREPYRPNSQVNTSFGTIAEIARLAIRALPPVKSFDGEETVECPICLEEFNKGELIQSFGVCTHEFHTSCLNSWLRGGKTTCPVCRQVLLPNH 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00804 160 SMART ring_2 110 152 IPR001841 -
Trre16g00804 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 157 IPR013083 -
Trre16g00804 160 SUPERFAMILY RING/U-box 101 158 - -
Trre16g00804 160 ProSiteProfiles Zinc finger RING-type profile. 110 153 IPR001841 -
Trre16g00804 160 Pfam Ring finger domain 109 153 IPR001841 -
Trre16g00804 160 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 155 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00804 Trre-Chr16 6147430 6147912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00804 61 157 C3H Transcription Factor Family AT1G76410 33.654 9.97e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00804 - K10664 mtr:25492793 144.821