Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00796 ATGCAGAATCACAGGCTCAAGCAACAGCAACAGCAGCAGCACCAACAACAACAACAAGCTCTGATGCAACAAGCTTTGATTCAACAGCAATCTCTCTATCATCCTGGTCTCTTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGTAACGTCCATACACAGGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCTGCCAATGGCCCAGTTGAAGGGTGTAAACTTTTTAGAAAGGAGAAGTCATCCTATGGGTTTATTCATTACTTCGACCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGGAGGCATCTATTTGGACAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACTGATGCTACTCTTTTTGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGTCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAGTCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGCAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGGAGGCATGGAAGAGAAGCAAACCTCATCAGACAACAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGAGGATGGTAAAGAGACATCTAACAATGATGCTCCTGAGAACAATCCTCAATATACAACTGTTTATGTGGGCAACCTTGGTTCGGAGGCAACACAACTTGATCTCCATCGCCATTTCCATGCTCTTGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGATTTGGTTTCGTGAGATATAGCACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATACTCAGTCTTACCTCTGTGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTACCCCCACCTGCTGCTCTACCTCTGCCTGGTCTGTCCGCAAACGATATTTTGGCGTACGAGCGGCAGCTAGCAATGAGCAAGATGGGTGGTGTTCATGCTGCGATGATGCATCCTCAAGCGCAACATCCTCTTAAGCAGGCTGCAATTGGAGCAAGCCAGGCGATATATGATGGCGGGTTCCAAAACGTTGCTGCTGCACAGCAAATGATGTACTATCAGTAA 1284 0.465 MQNHRLKQQQQQQHQQQQQALMQQALIQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAANGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGMEEKQTSSDNKSVVELTNGSSEDGKETSNNDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSYLCGKQIKCSWGSKPTPPGTASNPLPPPAALPLPGLSANDILAYERQLAMSKMGGVHAAMMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00796 427 Gene3D - 1 144 IPR012677 -
Trre16g00796 427 SMART rrm1_1 62 131 IPR000504 GO:0003723
Trre16g00796 427 SMART rrm1_1 147 220 IPR000504 GO:0003723
Trre16g00796 427 SMART rrm1_1 269 339 IPR000504 GO:0003723
Trre16g00796 427 MobiDBLite consensus disorder prediction 229 267 - -
Trre16g00796 427 FunFam Oligouridylate-binding protein 1C 245 347 - -
Trre16g00796 427 SUPERFAMILY RNA-binding domain, RBD 140 233 IPR035979 GO:0003676
Trre16g00796 427 CDD RRM2_PUB1 145 224 - -
Trre16g00796 427 SUPERFAMILY RNA-binding domain, RBD 45 139 IPR035979 GO:0003676
Trre16g00796 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 135 IPR000504 GO:0003723
Trre16g00796 427 FunFam oligouridylate-binding protein 1B-like isoform X2 1 143 - -
Trre16g00796 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 336 IPR000504 GO:0003723
Trre16g00796 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 129 IPR000504 GO:0003723
Trre16g00796 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 218 IPR000504 GO:0003723
Trre16g00796 427 Gene3D - 245 347 IPR012677 -
Trre16g00796 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 224 IPR000504 GO:0003723
Trre16g00796 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 343 IPR000504 GO:0003723
Trre16g00796 427 MobiDBLite consensus disorder prediction 225 267 - -
Trre16g00796 427 SUPERFAMILY RNA-binding domain, RBD 258 350 IPR035979 GO:0003676
Trre16g00796 427 Gene3D - 145 225 IPR012677 -
Trre16g00796 427 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 346 - -
Trre16g00796 427 FunFam oligouridylate-binding protein 1-like isoform X2 144 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00796 Trre-Chr16 6085992 6090931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00796 62 330 Eukaryotic Initiation Factors Gene Family AT1G49760 26.619 1.51e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00796 K13201 - gmx:100781227 754.207