Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00795 ATGTCTACTTTCCCAAATACTGTGTCAGATGGCCGGAGAGTCGCCGGAAAAGCACCGGAGAAGTTTAAATTTTCACAGACTTGTAGCCTCTTGAGTCAATTCTTGAAGGAAAAGAGAATTTCTGGTGATTCTGCTTCTGGATTGTTTGGAAAAATGGAACCTAAAGCAAGCACAAAGGATTTGTTAGGGGGTATGCAAAATTCAGATGGGGGTTTGAGACTAAATGCATCAACTATTGATTCTCTTCCTCAGCTTGTGGAAAATCCTTGCATTAAGAAGTCTAATTTAAGGTCAACGGCACCTGAAACACCTCAATTGACATTATTCTATGCCGGAAAATTGTTAGTATTCGATGCTTTTTCGCCTGCGAAAGCAACCGAGATCATGGAATTAGCCACCAAGTTAGCCTCTGAAATTCCAAGCACTGAAGAAAATCCACCAAGTGCACCTATCACTAGTGAAAAATCAAAGGAGTCCAAAGTTCCTCAAACAAACACTGCCTTAGAAACACCTAAACAAGGAAACAAAACCAATTGTTCAGATATGAGATATCCAAGAAGAGCTTCACTTCTTAAGTTCCTTGAGAAAAGAAAAGAAAGGGTTGTTGCTAGAGGACCTTATCAAATAAACAATCACAAAAATGAAGGTAGTAGTTCAGGAAGTGAACCTAAAGATCAACAAAGTTCTGAACACTTTGACCTTAACTTATAG 711 0.3896 MSTFPNTVSDGRRVAGKAPEKFKFSQTCSLLSQFLKEKRISGDSASGLFGKMEPKASTKDLLGGMQNSDGGLRLNASTIDSLPQLVENPCIKKSNLRSTAPETPQLTLFYAGKLLVFDAFSPAKATEIMELATKLASEIPSTEENPPSAPITSEKSKESKVPQTNTALETPKQGNKTNCSDMRYPRRASLLKFLEKRKERVVARGPYQINNHKNEGSSSGSEPKDQQSSEHFDLNL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00795 236 MobiDBLite consensus disorder prediction 139 182 - -
Trre16g00795 236 MobiDBLite consensus disorder prediction 210 236 - -
Trre16g00795 236 MobiDBLite consensus disorder prediction 139 183 - -
Trre16g00795 236 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 218 IPR040390 -
Trre16g00795 236 SMART tify_2 99 134 IPR010399 -
Trre16g00795 236 ProSiteProfiles Tify domain profile. 99 134 IPR010399 -
Trre16g00795 236 Pfam tify domain 101 132 IPR010399 -
Trre16g00795 236 MobiDBLite consensus disorder prediction 202 236 - -
Trre16g00795 236 Pfam Jas motif 186 208 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00795 Trre-Chr16 6080461 6082323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00795 12 209 Tify Gene Family AT1G19180 33.778 7.22e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre16g00795 tify 5.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00795 K13464 - gmx:100815478 329.717