Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00794 ATGGCCATAGTAGCTCCTGCAATTTTTCATCCAAAATTCTTCATCTTGATTTTCAACATCATCATAAATTTTTCTATGACATGTTCAATGTCAGAAGCAGAAGCTTTATTGAGCCTAAAAAACTCATTTTCAAATTCAGAAGCACTTGATAATTGGATTGCCAATACTTTTCCTTGTACCGAAGACGATCAATGGGCAGGCGTTGTTTGTTACAACGGTTTAGTAACCGGTCTGCGTCTCGGTGGAATGGGACTATTTGGAAAAATTGATGTTGATGCATTGCTTGAACTTAAAGGTTTAAGAACTATTAGTCTTATGAATAATTCTTTCACCGGTTCGATTCCTGAATTGAATCGAATCGGTTTCTTGAAAGCGATGTATTTATCGGGAAACAAATTTTCGGGAAATATTCCTCAGGAATATTTCCAAAGAATGAAATCATTGAAGAAAGTTTGGTTATCAAATAATGAATTCACAGGTGTTATTCCATCATCATTAACTGAGATTCCTCAACTTGTTGAATTACATCTTGAAAATAATCAGTTTAGTGGCAATATTCCAAATTTCAATAGACCTTCATTGGTGAAAATTAATCTTTCAAACAACAATTTGGAAGGTGAAGTTCCTGAAGGTTTGATGAGATTTAATCAAAGTTCTTTTCAAGGGAATTCGGGTTTATGCGGCGAGAAAATCGGTACAATATGTGGAAAACCAATGGAACAACCAAATCCTATTGGAGCACATAATATGAATAATATGACAGAACTTAAGAACAATAATAATAATAATGTTTATGTGAGTATGGCTGATAAAAGTAAGCATAAGTCATTGCAGATTATTGGTATTATTGTAACAAGTATAGTACTAATTTCACTTGCAATATTTTTGTTTATGAAATCAAGGAAAAAAAAAGAGAAAGTTGAATATGATGATGAAATTGGTGAGAATAATGGACAAGAAAGTATTAATGATATTGGTAGTGTTGAAGTTCAAGTAACTAGTAGTAGTAATAGTATTAGTACTAGTACTAATCATGTGAAAAAATCACCATCTAGTAGAAAAAATTCTTCTCATGCTAGTAAAGGGATGGGAGAGCTTATGATGATGAATGATGATAAGGGTGTGTTTGGTTTACCTGATTTGATGAAAGCTTCTGCAGAAGTGCTTGGAAATGGAGGGTTTGGATCATCTTATAAAGCTGTTATGTCTAATGGTTTGGCTGTGGTTGTGAAAAGAACTAGAGAGTTGAATGGTTTAGGAAAAGATGGTTTTGAAGCTGAGATGAAAAGGCTTGGAAGGGTTAAACATTGGAATGTTTTGACTCCTTTGGCTTATCATTATAGAAAGGATGAGAAATTAGTCATTTCTGAGTATGTTCCAAGAGGAAGTCTTCTCTATTTGCTTCATGGTGATAGAGGACCATCACATGCAGAACTAGATTGGAACACACGTTTAAAAATTGTACGAGGAATTGCAAAAGGAATGCATTATCTTCACACAGAACTTGCTTCTTCTGATCTACCACATGGAAACTTAAAATCAAGCAATGTTCTACTTGGACCAGATTATGAACCATTTCTCATGGACTTTGGTTTCATTAATCTAGTCAACCCTTCAAGTTATGCAAATACATTATTTGCTTATAAAGCTCCAGAAGCATTACAACATAACAAAGTTTCGCCTCGTTGCGACGTATACTGTCTCGGCGTAGTCATACTCGAAATACTAACCGGAAAATTTCCATCACAATATCTTAACAACGGTAAAGGCGGAACCGATGTAGTACAATGGGTAGCATCAGCAATTTGTGAAGGAAGAGAAGTTGAATTACTTGATCCTGAAATTGCAAGTAATAAAAAATCATTAAGTGAAATGCAACAACTTATTCATATTGGTGCTGCTTGTACTGAAAGTAATCCTAAAAAGAGATTAGATATGTTTGAAGCAATTAGAAGAATAGAAGGTATTAAAACAAAAGGTGTACATTTTCAAGAACAAGTTCAAGAATCAAGAACAATAGAGGTTTTACCATCACTTAGAGATGGTTTTGCAGATTCTTCTCAAGCATATGATAATCAAGGACATTTTGGTGATGAATCAAGAAGAAGACATGGAACAAGTAGTATTGGAAATAAGGATAATATTGAATTTGGTGTAGCATAA 2163 0.3384 MAIVAPAIFHPKFFILIFNIIINFSMTCSMSEAEALLSLKNSFSNSEALDNWIANTFPCTEDDQWAGVVCYNGLVTGLRLGGMGLFGKIDVDALLELKGLRTISLMNNSFTGSIPELNRIGFLKAMYLSGNKFSGNIPQEYFQRMKSLKKVWLSNNEFTGVIPSSLTEIPQLVELHLENNQFSGNIPNFNRPSLVKINLSNNNLEGEVPEGLMRFNQSSFQGNSGLCGEKIGTICGKPMEQPNPIGAHNMNNMTELKNNNNNNVYVSMADKSKHKSLQIIGIIVTSIVLISLAIFLFMKSRKKKEKVEYDDEIGENNGQESINDIGSVEVQVTSSSNSISTSTNHVKKSPSSRKNSSHASKGMGELMMMNDDKGVFGLPDLMKASAEVLGNGGFGSSYKAVMSNGLAVVVKRTRELNGLGKDGFEAEMKRLGRVKHWNVLTPLAYHYRKDEKLVISEYVPRGSLLYLLHGDRGPSHAELDWNTRLKIVRGIAKGMHYLHTELASSDLPHGNLKSSNVLLGPDYEPFLMDFGFINLVNPSSYANTLFAYKAPEALQHNKVSPRCDVYCLGVVILEILTGKFPSQYLNNGKGGTDVVQWVASAICEGREVELLDPEIASNKKSLSEMQQLIHIGAACTESNPKKRLDMFEAIRRIEGIKTKGVHFQEQVQESRTIEVLPSLRDGFADSSQAYDNQGHFGDESRRRHGTSSIGNKDNIEFGVA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00794 720 Gene3D Ribonuclease Inhibitor 191 235 IPR032675 -
Trre16g00794 720 Gene3D Transferase(Phosphotransferase) domain 1 459 676 - -
Trre16g00794 720 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Trre16g00794 720 SUPERFAMILY Protein kinase-like (PK-like) 387 653 IPR011009 -
Trre16g00794 720 MobiDBLite consensus disorder prediction 695 709 - -
Trre16g00794 720 MobiDBLite consensus disorder prediction 333 359 - -
Trre16g00794 720 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 658 IPR046959 -
Trre16g00794 720 MobiDBLite consensus disorder prediction 687 720 - -
Trre16g00794 720 Gene3D Phosphorylase Kinase; domain 1 349 458 - -
Trre16g00794 720 MobiDBLite consensus disorder prediction 333 360 - -
Trre16g00794 720 SUPERFAMILY L domain-like 58 214 - -
Trre16g00794 720 FunFam Nuclear pore complex protein NUP107 29 188 - -
Trre16g00794 720 ProSiteProfiles Protein kinase domain profile. 383 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00794 720 Pfam Protein kinase domain 387 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00794 720 Gene3D Ribonuclease Inhibitor 30 190 IPR032675 -
Trre16g00794 720 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00794 Trre-Chr16 6062816 6065636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00794 20 656 Receptor kinase-like Gene Family AT3G42880 45.802 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre16g00794 Pkinase 1.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00794 - - tpra:123886727 1273.46