Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00778 ATGGGAACTGCACCTGATGCTGGTCAGCTAATGGCCGTACTCTTGAAGTTGTTGAATGCTAAGAAGACAATTGAAGTCGGAGTTTTTACTGGATACTCTCTTCTCCTCACTGCACTTACCATTCCTGATGATGGAAAGATTATTGCTGTGGATCCAGACAGAAAAACTTATGAAATAGGACTTCCATCAATTAAAAAAGCTGGTGTAGAACACAAGATTGACTTCGTAGAGTCTCAAGCTTTACCTATTCTTGATAAACTCTTAGAAGATCCTTCAAATGATGGAAATTTCGACTTTGCTTATGTTGATGCTGATAAAGAAAATTATTGGAATTATCACGAGAGGCTTATTAAACTGATTAAGATTGGTGGATTAATTATCTATGATAACACTCTTTGGGGTGGAACTGTTGCATTGCCTGAAGAACTTATTCCAAGTCGTTTGAGAAAAATAAGACAAGGTGCACTTGCTTTCAACAAAGCAATTTCAAGTGATTCTCGTATTGAAATTTCTCTTGTTTCAATTGGTGATGGCTTCACTATATGTAAGCGTACTCATTGA 561 0.3672 MGTAPDAGQLMAVLLKLLNAKKTIEVGVFTGYSLLLTALTIPDDGKIIAVDPDRKTYEIGLPSIKKAGVEHKIDFVESQALPILDKLLEDPSNDGNFDFAYVDADKENYWNYHERLIKLIKIGGLIIYDNTLWGGTVALPEELIPSRLRKIRQGALAFNKAISSDSRIEISLVSIGDGFTICKRTH 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00778 186 PANTHER O-METHYLTRANSFERASE-RELATED 1 185 - -
Trre16g00778 186 Gene3D Vaccinia Virus protein VP39 1 185 IPR029063 -
Trre16g00778 186 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 184 IPR029063 -
Trre16g00778 186 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 185 IPR002935 GO:0008171
Trre16g00778 186 Pfam O-methyltransferase 1 184 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00778 Trre-Chr16 5972198 5974283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00778 1 186 Monolignol Biosynthesis Gene Families AT4G26220 66.129 5.27e-93 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00778 K00588 - gmx:100792717 308.531