Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00766 ATGGCTAGCATCAACCAAGAACAGCTGAACAACAAGGATGTCAGTTTGGACCGGATGCCACTGAATGAAGTGTTTGAACACCTGAAATGCTCGAGGGAAGGACTCACTTCCGAGGAAGGAGCCAACAGGCTTCAAGTGTATGGTCGAAACAAATTAGAAGAGAAAAAAGAGAGCAAGTTTTTGAAGTTTTTGGGGTTTATGTGGAACCCTTTGTCTTGGGTTATGGAAGCTGCTGCCATCATGGCGATTGCTCTGGCGAATGGTGGAGGAAAGCCTCCGGACTGGCAAGATTTTGTTGGAATTCTTATTCTCTTGGTGATCAACTCGACTATCAGTTTCTTCGAAGAGAACAATGCTGGCAATGCTGCGGCCGCTCTTATGGCTGGATTAGCTCCAAAGACAAAGGTGCTAAGAGACGGAAAATGGAGTGAGCAAGATGCTGCCATTTTAGTACCAGGAGATATTATCAGCATCAAGCTAGGAGACATTATTCCAGCCGATGCACGACTACTAGAGGGTGATCCTTTAAGCGTTGATCAATCTGCCTTAACAGGAGAATCACTTCCTGTAACAAAGTGTGCAACTCAAGAAGTGTTCTCAGGATCGACAGTTAAAAAGGGCGAAATCGAAGCTATTGTGTATGCTACTGGTGTTCACACTTTCTTCGGCAAAGCAGCTCATTTGGTGGATAGTACTAATCAAGTGGGACATTTCCAGAAGGTGCTGACCGCTATCGGAAACTTCTGCATTTGTTCGATTGCCATTGGTATACTAGTTGAGATTGTCGTGATGTATCCGATTCAACACCGCAAGTATAGAGATGGAATTGACAATCTTTTGGTTTTATTGATTGGTGGAATTCCAATTGCTATGCCAACTGTTTTGTCTGTTACTATGGCTATCGGTTCTCATAGGCTTTCGAAGCAAGGCGCAATCACAAAAAGAATGACTGCTATTGAGGAAATGGCTGGCATGGATGTTCTGTGCAGTGATAAAACTGGTACTCTCACTCTGAATAAGCTTAGTGTTGATAAAAACTTGATTGAGGTGTTTGCTAGAGGTGTTGATAAGGACCAAGTGATACTTCTAGCTGCAAGAGCTTCTAGGACAGAAAATCAAGATGCTATTGATGCTGCAATTGTTGGAATGCTTGCTGATCCACAAGAGACTGAATTTATTGGTATCAATGAGGTTCACTTTCTTCCGTTCAATCCAGTAGACAAGAGGACTGCTCTTACCTATGTTGATGCTGATGGAAATTGGCATAGAGCTAGCAAAGGAGCTCCTGAACAGATATTGAATCTCTGCAACTGCAGAGAGAATGTAAGGAGAAAGGCTCATACAGTGATTGATAGATTTGCTGAGCGTGGACTACGGTCCTTAGGTGTTGCTTATCAGGAAGTCCCCGAGAAATCCAAAGACGGACAAGGTGCTCCTTGGCAATTTGTTGGACTATTGCCCTTATTCGATCCCCCAAGGCATGACAGTGCTGAAACCATTAGAAGAGCACTCAACCTTGGCGTTAATGTAAAAATGATTACCGGGGACCAACTTGCCATTGGGAAGGAAACAGGCAGAAGGCTTGGAATGGGAACGAACATGTATCCATCATCTGCATTGCTCGGAGAAGGTTCTTCTACTTCAGATGTTCCTGTTGATGAGTTGATCGAGAAAGCCGATGGATTTGCAGGAGTATTTCCCGAACACAAATTTGCAATTGTAAAAAAACTTCAAGAGAGGAAGCACATATGTGGAATGACCGGTGATGGTGTAAACGACGCACCAGCGTTGAAGAGAGCTGATATCGGAATTGCTGTTGCTGATGCAACTGATGCTGCTAGAAGTGCTTCTGATATTGTCCTCACTGAACCTGGTTTGAGTGTAATTATCAGTGCTGTGCTCACCAGCAGGGCCATTTTCCAAAGGATGAAAAACTATACCATTTATGCTGTGTCCATCACCATTCGTATCGTGCTTGGTTTCATGCTCATTGCTTTGATCTGGAAATTTGATTTTTCCCCCTTCATGGTTCTGATAATTGCAATACTGAATGATGGTACCATAATGACAATATCAAAGGATAGAGTGAAACCATCTCCGCTACCCGACAGTTGGAAACTGAAGGAGATATTCGCTACCGGTGTTGTGCTTGGCAGTTACAAGGCACTGATGACAGTCATATTTTTCTGGGTGGTGCATGATACCGACTTTTTCTCGGAGAAGTTTGGTGTGAGGTCTATAAGACATAACCCTGGAGAAATGATGGCGGCTTTATATCTACAAGTCAGTATAATAAGCCAAGCACTGATTTTCGTAACTAGGTCTCGCAATTGGTCTTTCTTGGAAAGACCTGGCCTTTTACTACTCGTTGCTTTTGTCGGTGCTCAACTGGTTGCTACACTTATAGCAGTGTATGCTAATTAG 2424 0.4344 MASINQEQLNNKDVSLDRMPLNEVFEHLKCSREGLTSEEGANRLQVYGRNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGILILLVINSTISFFEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISIKLGDIIPADARLLEGDPLSVDQSALTGESLPVTKCATQEVFSGSTVKKGEIEAIVYATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGILVEIVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFARGVDKDQVILLAARASRTENQDAIDAAIVGMLADPQETEFIGINEVHFLPFNPVDKRTALTYVDADGNWHRASKGAPEQILNLCNCRENVRRKAHTVIDRFAERGLRSLGVAYQEVPEKSKDGQGAPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGEGSSTSDVPVDELIEKADGFAGVFPEHKFAIVKKLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGSYKALMTVIFFWVVHDTDFFSEKFGVRSIRHNPGEMMAALYLQVSIISQALIFVTRSRNWSFLERPGLLLLVAFVGAQLVATLIAVYAN 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00766 807 PRINTS H+-transporting ATPase (proton pump) signature 587 603 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00766 807 PRINTS H+-transporting ATPase (proton pump) signature 618 643 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00766 807 PRINTS H+-transporting ATPase (proton pump) signature 759 780 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00766 807 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00766 807 PRINTS H+-transporting ATPase (proton pump) signature 559 575 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00766 807 FunFam Plasma membrane ATPase 482 635 - -
Trre16g00766 807 Gene3D - 132 216 - -
Trre16g00766 807 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Trre16g00766 807 FunFam Plasma membrane ATPase 132 216 - -
Trre16g00766 807 SFLD p-type atpase 311 638 IPR044492 -
Trre16g00766 807 Gene3D - 341 489 IPR023299 GO:0000166
Trre16g00766 807 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Trre16g00766 807 PRINTS P-type cation-transporting ATPase superfamily signature 610 622 - -
Trre16g00766 807 PRINTS P-type cation-transporting ATPase superfamily signature 587 606 - -
Trre16g00766 807 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Trre16g00766 807 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Trre16g00766 807 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Trre16g00766 807 Pfam haloacid dehalogenase-like hydrolase 325 601 - -
Trre16g00766 807 FunFam ATPase 4 plasma membrane-type 571 807 - -
Trre16g00766 807 PANTHER CALCIUM-TRANSPORTING ATPASE 23 806 - -
Trre16g00766 807 Pfam E1-E2 ATPase 131 309 - -
Trre16g00766 807 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 805 IPR023298 -
Trre16g00766 807 Gene3D - 326 624 IPR023214 -
Trre16g00766 807 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Trre16g00766 807 SFLD Haloacid Dehalogenase 311 638 - -
Trre16g00766 807 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Trre16g00766 807 NCBIfam HAD-IC family P-type ATPase 101 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00766 807 NCBIfam HAD-IC family P-type ATPase 562 675 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00766 807 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Trre16g00766 807 Gene3D - 94 806 - -
Trre16g00766 807 CDD P-type_ATPase_H 34 807 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre16g00766 807 FunFam Plasma membrane ATPase 341 489 - -
Trre16g00766 807 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 805 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre16g00766 807 SUPERFAMILY HAD-like 325 634 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00766 Trre-Chr16 5833492 5838928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00766 7 807 Primary Pumps ATPases AT3G42640 82.565 0.0 1353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00766 K01535 - gmx:100791692 1356.27