Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00763 ATGAGTAACAGAAGAGGAAACAAAACTTTACCAGTCGGGGAACCTTCACAAGGGGGGAGACCCACCAAGAGACTACAAGTTCCTATGGTTGATTTTGCTGAAAATGACAAAGTTGTCATCGAAATTTCGTCAAGTGCTTTTGTTGAGGCCGTGACAAATGCGAGAAGAATTCGTAGAAGTATTGGAGATAACTTGAATATGGAAAATCAAACCATGCCAACTTATTTTATGCAAGACAGAAACCAGATTATCCAACAAATTGATGGTATTTATATCAATTTGGAAGAAGACACTAGTGAAGTGATTGGAAATGCCACAAAGTCACTTGAAACTAATAAGAAAAACCCTGAGCTTAAGAACAAGGCACCAGAATCTCCAAAAGAGCCTAGCATAATATGGCCAATATGCATTGGTCCTTTTGTTGAGGAAACGACAACAAGATGTGGCCATATATTTTGCAAAAACTGCATCAAATCTGCATTAACTGCACGTCGTATATGCCCTGTTAAGGTGTATCTTCCATCTCTAATTGAAGAATCATCCAGTGATGGTGAGGAAAATTGA 564 0.3848 MSNRRGNKTLPVGEPSQGGRPTKRLQVPMVDFAENDKVVIEISSSAFVEAVTNARRIRRSIGDNLNMENQTMPTYFMQDRNQIIQQIDGIYINLEEDTSEVIGNATKSLETNKKNPELKNKAPESPKEPSIIWPICIGPFVEETTTRCGHIFCKNCIKSALTARRICPVKVYLPSLIEESSSDGEEN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00763 187 ProSitePatterns Zinc finger RING-type signature. 148 157 IPR017907 -
Trre16g00763 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 171 IPR013083 -
Trre16g00763 187 Pfam Zinc finger, C3HC4 type (RING finger) 134 169 - -
Trre16g00763 187 ProSiteProfiles Zinc finger RING-type profile. 134 169 IPR001841 -
Trre16g00763 187 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g00763 187 PANTHER ELFLESS, ISOFORM B 13 169 - -
Trre16g00763 187 SUPERFAMILY RING/U-box 134 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00763 Trre-Chr16 5817093 5820751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00763 34 175 C3H Transcription Factor Family AT3G07200 30.519 1.81e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00763 K22651 - tpra:123891564 190.66