Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00762 ATGTCTCCAAAGAAAATTCAATGGAAAGCTTTTGTGTTTGGTTGTTTCAAAGACAAACAACATCCTACCTTGGAAACACCAAAATTTGTTTCAAAAAAGACAGGTTCAAGTAGAATTTCTCTATCTGATTTAAGTGATTATTCATCACCTTCTGTTATGAGTGATTTATCCAATTCATTAGTGGGATCAAATCTTCATATTTTCACTTGCAAAGAACTCCAAGAGATCACAAATAATTTCAACAAATCAAATTTTCTTGGAGAAGGTGGATTTGGTAAGGTATACAAAGGTTTTATTGATGATAAACTTAGGCCTACACTTGTTCCTCAAACTGTAGCTGTTAAAGCCTTAAACTTGGATGGAAAACAAGGCCATAGAGAGTGGTTGGCTGAGGTAATCTTTTTGGGGCAGTTGAAGCATCGCAATCTTGTTAACTTAATTGGTTATTGTTATGAAGATGAACATAGACTTCTTGTGTATGAATACATGGAAAGAGGAAGTCTTGAAGAAAAACTTTTCAAAGGTTATTTAGCAACCTTACCTTGGTTAACAAGAATCAAAATAGCAATTGGTGCTGCTAAAGGACTAGCTTTTCTTCATGAAGAAGAAAAACCAGTTATATATAGAGATGTTAAAGCCTCAAATATTCTATTGGATGCTGATTACAATGCTAAGCTTTCAGATTTTGGTTTAGCAATTGATGGACCAGATAAAGATCAAACACATATCACAACTCGTGTGATGGGTACACAAGGTTATGCTGCTCCTGAATATATCAATACAGGTCGTTTGACAACAATGAGTGATGTATATAGTTTTGGAGTTGTTCTTTTAGAACTACTAACAGGAAAGAAATCAGTGGACAAAAAAAGACCTACAAGAGAGCAAGATTTAGTAGAATGGGCAAGACCATTATTGAAAGATTCACACAAATTTGAAAGAATAATTGATTCAAGACTTGAAGATCAATATTCAATTGAAGGTGCTAGAAAATTAGCATGTTTAACTTATCAATGTCTAAGTCATCATGATAAAAGTAGACCAAGCATGAGAACAGTTGTTAAGACATTAGAGTCACTCATGAAATTAAATGACATTCCAATTGGTCATTTTGTTTATGTGGCTCCTAGTGAAGTAACAAATGTTGATGTGTCACTAAATGTGACTCATAAAAATGGACTAGAAAATGTATGTGATGAGAATAAGAATGAGAATGTTATCAACAAAAGTGTTGTGAAAACTAAAGATGAAGAGAAGATAGAGAAAAATGAAAAGGGTCGCGAAATTCGTCGCAAAAGTCGCAGTACTCGACGACGAGTTAAGGCGTTGATGAGGTCTCGTTCGGTTTACTCTGACACTGCTCTGTATAAAACTCTTGGAACAAGTTTGTATTCACCTAAGCAAAGCAAGGAGAAGCAACAAGAAGTTGAAATTTGCCAATATTAG 1446 0.343 MSPKKIQWKAFVFGCFKDKQHPTLETPKFVSKKTGSSRISLSDLSDYSSPSVMSDLSNSLVGSNLHIFTCKELQEITNNFNKSNFLGEGGFGKVYKGFIDDKLRPTLVPQTVAVKALNLDGKQGHREWLAEVIFLGQLKHRNLVNLIGYCYEDEHRLLVYEYMERGSLEEKLFKGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPDKDQTHITTRVMGTQGYAAPEYINTGRLTTMSDVYSFGVVLLELLTGKKSVDKKRPTREQDLVEWARPLLKDSHKFERIIDSRLEDQYSIEGARKLACLTYQCLSHHDKSRPSMRTVVKTLESLMKLNDIPIGHFVYVAPSEVTNVDVSLNVTHKNGLENVCDENKNENVINKSVVKTKDEEKIEKNEKGREIRRKSRSTRRRVKALMRSRSVYSDTALYKTLGTSLYSPKQSKEKQQEVEICQY 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00762 481 Pfam Protein tyrosine and serine/threonine kinase 83 357 IPR001245 GO:0004672|GO:0006468
Trre16g00762 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Trre16g00762 481 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 163 366 - -
Trre16g00762 481 Gene3D Phosphorylase Kinase; domain 1 46 162 - -
Trre16g00762 481 Gene3D Transferase(Phosphotransferase) domain 1 163 367 - -
Trre16g00762 481 SMART serkin_6 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00762 481 FunFam Serine/threonine-protein kinase BIK1 47 162 - -
Trre16g00762 481 ProSitePatterns Protein kinases ATP-binding region signature. 86 115 IPR017441 GO:0005524
Trre16g00762 481 CDD STKc_IRAK 86 360 - -
Trre16g00762 481 SUPERFAMILY Protein kinase-like (PK-like) 53 358 IPR011009 -
Trre16g00762 481 PANTHER OS01G0588500 PROTEIN-RELATED 47 360 - -
Trre16g00762 481 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00762 Trre-Chr16 5799228 5801585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00762 68 386 Glycoside Hydrolase AT3G07070 48.923 6.34e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g00762 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00762 - - gmx:100790454 671.003