Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00757 ATGTCTTCTCAAGAACAAGCACTAATCTCTCTTCTCTCTCAGTTAGCCCTATCCTTCGACGGCGCCGTTTTTGGTTTAGCCGTAGCCTACGTCGCCGTTCGCTCCATCCGCAAATTCACCGTCACCTCCGCCGCTCTCCAAAAAATCAGCCACGCTCCTTCTGTTTCCGTCTCTGACCTACGCTCGCTCTTAACCGAGACTGATTCAGACGCTGAAGGATACTCCGATGATGGCAAAATCGTAATTGTCCGCGGTACTGTTGATGCTAAGTCTGCTGTTGATGGCAGTTGGAAAACCTTGTGGCCTGGTGTATTGGTTTCTCGCGAGTCTGGTGATAAAGGTGTTGTTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAGGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATACTTACAAGATCTTGGAGACAACAAGAGTCCACATCCTTAAGAAAGGTCCCTTTTGTTCTCATTGATGTTGGACGGCGGCCAAATACTGAATATGTTGTTGTCAGCATGGATGGTTCAACACATCCTTTACCTCTTGCAACAATTTATCATAAATTGGAACCCATAAATTCTCCTCCATATACTTTCTTGCAAGCTCTTTTTGGGCATGAATATCCGATTGGAGTGCTTGATGAAGAGAAAATTCTTCCCTTGGGGAAGGATATCAGTGCTGTAGGCCTTTGCAGTTTAAGAAATGGAATTGCTGAAATCAAGTCTTGCAATGATCTTCCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATTGTAGATCTTTCCTTTAAAGCGAAAGTACTGTTTTGGAGTGGCATTGCTCTTGGTACAATGTCAGTTGGGATCATTGGCTATGCAATTGTGAGGAACTGGAATAAATGGAAACAATGGAAGGAACATAGGCAGATCCAGCAACAAAGGCAAACAATCATTGAAGCTGATTCTGATGATGAGGTTGGAGATGTTCCAGATGGACAATTATGCGTTATATGTCTGATGAGGAGAAGGCGTTCTGTTTTTATTCCATGTGGGCATCTTGTATGTTGCCAAGGGTGTGCTATGTCAGTTGAAAGTGAAGTGGCACCCAAGTGTCCAGTTTGTCGTCAGGAAATTCGGGATTCAGTGCGAATCTTCGAATCTTGA 1158 0.4352 MSSQEQALISLLSQLALSFDGAVFGLAVAYVAVRSIRKFTVTSAALQKISHAPSVSVSDLRSLLTETDSDAEGYSDDGKIVIVRGTVDAKSAVDGSWKTLWPGVLVSRESGDKGVVLQRTQTCIYNEWKGLFGWTSDLRAILTRSWRQQESTSLRKVPFVLIDVGRRPNTEYVVVSMDGSTHPLPLATIYHKLEPINSPPYTFLQALFGHEYPIGVLDEEKILPLGKDISAVGLCSLRNGIAEIKSCNDLPYFLSDLSKDQMIVDLSFKAKVLFWSGIALGTMSVGIIGYAIVRNWNKWKQWKEHRQIQQQRQTIIEADSDDEVGDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAMSVESEVAPKCPVCRQEIRDSVRIFES 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00757 385 CDD RING-HC_SPL2-like 328 374 - -
Trre16g00757 385 ProSiteProfiles Zinc finger RING-type profile. 333 373 IPR001841 -
Trre16g00757 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 385 IPR044247 GO:0004842
Trre16g00757 385 Pfam Zinc finger, C3HC4 type (RING finger) 331 378 - -
Trre16g00757 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 385 IPR013083 -
Trre16g00757 385 SMART ring_2 333 372 IPR001841 -
Trre16g00757 385 Pfam E3 Ubiquitin ligase 141 287 IPR022170 GO:0004842|GO:0006996|GO:0016567
Trre16g00757 385 SUPERFAMILY RING/U-box 332 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00757 Trre-Chr16 5753429 5762506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00757 322 382 C3H Transcription Factor Family AT3G06140 37.705 1.51e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00757 K15688 - gmx:100800058 625.55