Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00737 ATGATGAGTGCAAGTTCAAGAAATAGGTCACCTTTCACACCAAATCAATGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTTACTGGAACACCTATTCCACCAGATCTCATTTACTCTATCAAGAGAAGTTTAGATACTTCAATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAGATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAATACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACAATTAGTAGTTTCTTCTGCAAACACAACCTCTCTAACAAACACAACATCATCAACATCATCATCATCTTCTCTTTATACTAACAGAAACATCTCCTTGAACAACAGTAGCAGCTTAACTTCTTCTTTTCCTTTTTCTACTTCTATGTCTTGTCATGATCAACAACAACAATCCTTTTCACAATCCTACCAAAACTCTTCTCAAAACCCTTACTTTTACTCTCAACAATCTACCTCTTCTAAACCCCTTGATCATTCTGATTTTCATACTCAAGATGCTACTACTCATCATCTCTTTTTGGACTCTTCATCTTATTCTCATGATGATAAAGACTATAGGAGGCAAGTTCATGGAATAAGGGATGGTGTGGATGAGAGAACTTTCTTTCCAGAAGCAACAGGGTCTTCTAGGAGCTATCAATATGGTTCATATAATCAACAACTACCAGTGAATCCTTTTAAGTCATATTCAAGTTCACAACAATATCAGAACATCAATGATAACACAAGACAGCAAGAACATCAGCAGCAACAAGAACAACACTGTTTTGTTTTAGGCACTGACTTCAAATCAACTAGACCAACAAACAAGGACAAAGAAAGTGAGACAACTCAGAAACCACTTCATCATTTCTTTGGAGAGTGGACACCAAAGAACACTGATTCTTGGTTAGATCTTGCTTCCAACTCCAGAATCCCAACAGGTTTATGA 1068 0.3801 MMSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQLVVSSANTTSLTNTTSSTSSSSSLYTNRNISLNNSSSLTSSFPFSTSMSCHDQQQQSFSQSYQNSSQNPYFYSQQSTSSKPLDHSDFHTQDATTHHLFLDSSSYSHDDKDYRRQVHGIRDGVDERTFFPEATGSSRSYQYGSYNQQLPVNPFKSYSSSQQYQNINDNTRQQEHQQQQEQHCFVLGTDFKSTRPTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTGL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00737 355 MobiDBLite consensus disorder prediction 175 208 - -
Trre16g00737 355 MobiDBLite consensus disorder prediction 175 203 - -
Trre16g00737 355 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g00737 355 MobiDBLite consensus disorder prediction 311 326 - -
Trre16g00737 355 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g00737 355 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Trre16g00737 355 Pfam WRC 77 119 IPR014977 -
Trre16g00737 355 MobiDBLite consensus disorder prediction 308 327 - -
Trre16g00737 355 MobiDBLite consensus disorder prediction 125 144 - -
Trre16g00737 355 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g00737 355 PANTHER GROWTH-REGULATING FACTOR 5 10 341 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00737 Trre-Chr16 5603386 5605126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00737 3 333 GRF Transcription Factor Family AT3G13960 40.811 3.21e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre16g00737 WRC 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00737 - - aprc:113851425 449.899