Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00736 ATGATGAGTGCAAGTTCAAGAAATAGGTCACCTTTCACACCAAATCAATGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTTACTGGAACACCTATTCCACCAGATCTCATTTACTCTATCAAGAGAAGTTTAGATACTTCAATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAGATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAATACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACAATTAGTAGTTTCTTCTGCAAACACAACCTCTCTAACAAACACAACATCATCAACATCATCATCATCTTCTCTTTATACTAACAGAAACATCTCCTTGAACAACAGTAGCAGCTTAACTTCTTCTTTTCCTTTTTCTACTTCTATGTCTTGTCATGATCAACAACAACAATCCTTTTCACAATCCTACCAAAACTCTTCTCAAAACCCTTACTTTTACTCTCAACAATCTACCTCTTCTAAACCCCTTGATCATTCTGATTTTCATACTCAAGATGCTACTACTCATCATCTCTTTTTGGACTCTTCATCTTATTCTCATGATGATAAAGACTATAGGCAAGTTCATGGAATAAGGGATGGTGTGGATGAGAGAACTTTCTTTCCAGAAGCAACAGGGTCTTCTAGGAGCTATCAATATGGTTCATATAATCAACAACTACCAGTGAATCCTTTTAAGTCATATTCAAGTTCACAACAATATCAGAACATCAATGATAACACAAGACAGCAAGAACATCAGCAGCAACAAGAACAACACTGTTTTGTTTTAGGCACTGACTTCAAATCAACTAGACCAACAAACAAGGACAAAGAAAGTGAGACAACTCAGAAACCACTTCATCATTTCTTTGGAGAGTGGACACCAAAGAACACTGATTCTTGGTTAGATCTTGCTTCCAACTCCAGAATCCCAACAGGTTTATGA 1065 0.3793 MMSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQLVVSSANTTSLTNTTSSTSSSSSLYTNRNISLNNSSSLTSSFPFSTSMSCHDQQQQSFSQSYQNSSQNPYFYSQQSTSSKPLDHSDFHTQDATTHHLFLDSSSYSHDDKDYRQVHGIRDGVDERTFFPEATGSSRSYQYGSYNQQLPVNPFKSYSSSQQYQNINDNTRQQEHQQQQEQHCFVLGTDFKSTRPTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTGL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00736 354 MobiDBLite consensus disorder prediction 175 208 - -
Trre16g00736 354 MobiDBLite consensus disorder prediction 307 326 - -
Trre16g00736 354 MobiDBLite consensus disorder prediction 175 203 - -
Trre16g00736 354 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g00736 354 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Trre16g00736 354 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g00736 354 PANTHER GROWTH-REGULATING FACTOR 5 10 340 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre16g00736 354 Pfam WRC 77 119 IPR014977 -
Trre16g00736 354 MobiDBLite consensus disorder prediction 125 144 - -
Trre16g00736 354 MobiDBLite consensus disorder prediction 310 325 - -
Trre16g00736 354 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00736 Trre-Chr16 5603386 5605126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00736 3 332 GRF Transcription Factor Family AT3G13960 41.081 1.70e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre16g00736 WRC 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00736 - - aprc:113851425 451.055