Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00733 ATGAGTAACTGGTTAGGATTTTCTCTTACTCCACACTTGAGGATTGATGAAGAATTTGGTAGAGAAAATCAAAACCAAAATCAAGAACATCATGGTGAAGGATCAGAAATTATAGGAAGAAACTATGTTCCTCCTTCTTCTTCTTCTCATCATCAACATCTTCATAATCACTTATCTGTTATGCCTCTGCGTTCTGATGGTTCACTCTGTGTTTCAGATACTTTCACTCACTCAGTTACACCTCAAGAATGGAGATATGAAAATGCAATAACTGATGGAAATTCAAATGAAGAAGGACCAAAACTTGAAGATTTTTTGGGATGTTACCAAAATCAAAACCAAAATAGTACTACTAATACTATTTCTAAAATCAATGTTAATGTAACACCAAGTTTTTGCACTAATAATAATACAGAGATTGAAACTAGGGAAAATCTAACAAACCAATCTTTGATTCACTCTTTCCATCATGGATATAATGATAATAACAACAATAATAATCATCATGGTTTAATTCATGGTAATAGTATGTATAAATCTTGGATGAGTCAGAATCATTTTTCTTGTGATGGGAAAAATTCTAGTGATGGAAATGGTTTTCAATCTCTTAATTTAACTATGAGTCCTAGTGTGCAAAATGGTGTTAGTGTTGGTGTTGGTGGTGGTGCAATTTCAACTGTTCAAGTGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTAATGCTCCTAGAGAACCTGTTCCTCGTAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATATCGTGGTGTTACAAGGCATAGATGGACAGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGACTTAGCTGCACTGAAGTATTGGGGTCCAACAACTCACATAAATTTTCCTATAAGCACTTATGAGAAGGAACTTGAAGAAATGAAGCACATGACTAGACAAGAATTTGTCGCCAATTTAAGAAGAAAAAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTAGGATAGGAAGGGTTGCAGGAAACAAAGATTTATATCTTGGCACATTTAGCACACAAGAAGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAATTTAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATCACCGGCGATCTCGCTAAACGCTCTCCTAAAGACTCGTCCGCTCCTCCTGCAGCCACAACCGAGGACTTCAATTCGTGCGGAAGTTCATCAACACCTTCTCAGCCACCTCCTCTAGCTATTACCGATGGCGAACAACATTCTGATGAATTGTCCAACATGGTTTGGAATTCCAACAGCGAGCAACCACCGAAGAATGAGTGCGGAAACAACACTAACATCAATGAATCGTCACAGCACGATTCACAAAGCGGCAAGAATGAGATGAACCCTCAAAGTCCCAAATTACCTAATGAGTTTGGAGTGAGTGGTGCAGATTATGGACATGGTTACTTCACACTGAATGAACCAAAATATGATGATGGAAGCAATGAAAATGACCACATGAATAACAATAGGCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCGATGTTTGCTTTGTGGAATGAATGA 1758 0.38 MSNWLGFSLTPHLRIDEEFGRENQNQNQEHHGEGSEIIGRNYVPPSSSSHHQHLHNHLSVMPLRSDGSLCVSDTFTHSVTPQEWRYENAITDGNSNEEGPKLEDFLGCYQNQNQNSTTNTISKINVNVTPSFCTNNNTEIETRENLTNQSLIHSFHHGYNDNNNNNNHHGLIHGNSMYKSWMSQNHFSCDGKNSSDGNGFQSLNLTMSPSVQNGVSVGVGGGAISTVQVNEDPRKRSLSKSNAPREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAAKAYDLAALKYWGPTTHINFPISTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLITGDLAKRSPKDSSAPPAATTEDFNSCGSSSTPSQPPPLAITDGEQHSDELSNMVWNSNSEQPPKNECGNNTNINESSQHDSQSGKNEMNPQSPKLPNEFGVSGADYGHGYFTLNEPKYDDGSNENDHMNNNRLGNLGLVNQVPMFALWNE 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00733 585 PRINTS Ethylene responsive element binding protein signature 263 274 IPR001471 GO:0003700|GO:0006355
Trre16g00733 585 PRINTS Ethylene responsive element binding protein signature 401 421 IPR001471 GO:0003700|GO:0006355
Trre16g00733 585 Gene3D AP2/ERF domain 261 327 IPR036955 GO:0003700|GO:0006355
Trre16g00733 585 Gene3D AP2/ERF domain 361 421 IPR036955 GO:0003700|GO:0006355
Trre16g00733 585 SMART rav1_2 262 331 IPR001471 GO:0003700|GO:0006355
Trre16g00733 585 SMART rav1_2 361 425 IPR001471 GO:0003700|GO:0006355
Trre16g00733 585 CDD AP2 360 421 IPR001471 GO:0003700|GO:0006355
Trre16g00733 585 MobiDBLite consensus disorder prediction 226 253 - -
Trre16g00733 585 FunFam AP2-like ethylene-responsive transcription factor ANT 261 327 - -
Trre16g00733 585 MobiDBLite consensus disorder prediction 22 36 - -
Trre16g00733 585 CDD AP2 261 327 IPR001471 GO:0003700|GO:0006355
Trre16g00733 585 MobiDBLite consensus disorder prediction 448 531 - -
Trre16g00733 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 95 507 - -
Trre16g00733 585 SUPERFAMILY DNA-binding domain 261 327 IPR016177 GO:0003677
Trre16g00733 585 ProSiteProfiles AP2/ERF domain profile. 262 325 IPR001471 GO:0003700|GO:0006355
Trre16g00733 585 SUPERFAMILY DNA-binding domain 360 421 IPR016177 GO:0003677
Trre16g00733 585 ProSiteProfiles AP2/ERF domain profile. 361 419 IPR001471 GO:0003700|GO:0006355
Trre16g00733 585 MobiDBLite consensus disorder prediction 22 54 - -
Trre16g00733 585 MobiDBLite consensus disorder prediction 438 538 - -
Trre16g00733 585 FunFam AP2-like ethylene-responsive transcription factor 360 421 - -
Trre16g00733 585 Pfam AP2 domain 360 411 IPR001471 GO:0003700|GO:0006355
Trre16g00733 585 Pfam AP2 domain 262 317 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00733 Trre-Chr16 5558714 5562936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00733 1 449 AP2-EREBP Transcription Factor Family AT1G72570 48.734 7.17e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g00733 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00733 K09285 - gmx:100809762 803.512