Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00732 ATGAGTAACTGGTTAGGATTTTCTCTTACTCCACACTTGAGGATTGATGAAGAATTTGGTAGAGAAAATCAAAACCAAAATCAAGAACATCATGGTGAAGGATCAGAAATTATAGGAAGAAACTATGTTCCTCCTTCTTCTTCTTCTCATCATCAACATCTTCATAATCACTTATCTGTTATGCCTCTGCGTTCTGATGGTTCACTCTGTGTTTCAGATACTTTCACTCACTCAGTTACACCTCAAGAATGGAGATATGAAAATGCAATAACTGATGGAAATTCAAATGAAGAAGGACCAAAACTTGAAGATTTTTTGGGATGTTACCAAAATCAAAACCAAAATAGTACTACTAATACTATTTCTAAAATCAATGTTAATGTAACACCAAGTTTTTGCACTAATAATAATACAGAGATTGAAACTAGGGAAAATCTAACAAACCAATCTTTGATTCACTCTTTCCATCATGGATATAATGATAATAACAACAATAATAATCATCATGGTTTAATTCATGGTAATAGTATGTATAAATCTTGGATGAGTCAGAATCATTTTTCTTGTGATGGGAAAAATTCTAGTGATGGAAATGGTTTTCAATCTCTTAATTTAACTATGAGTCCTAGTGTGCAAAATGGTGTTAGTGTTGGTGTTGGTGGTGGTGCAATTTCAACTGTTCAAGTGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTAATGCTCCTAGAGAACCTGTTCCTCGTAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATATCGTGGTGTTACAAGGCATAGATGGACAGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGACAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGACTTAGCTGCACTGAAGTATTGGGGTCCAACAACTCACATAAATTTTCCTATAAGCACTTATGAGAAGGAACTTGAAGAAATGAAGCACATGACTAGACAAGAATTTGTCGCCAATTTAAGAAGAAAAAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTAGGATAGGAAGGGTTGCAGGAAACAAAGATTTATATCTTGGCACATTTAGCACACAAGAAGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAATTTAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATCACCGGCGATCTCGCTAAACGCTCTCCTAAAGACTCGTCCGCTCCTCCTGCAGCCACAACCGAGGACTTCAATTCGTGCGGAAGTTCATCAACACCTTCTCAGCCACCTCCTCTAGCTATTACCGATGGCGAACAACATTCTGATGAATTGTCCAACATGGTTTGGAATTCCAACAGCGAGCAACCACCGAAGAATGAGTGCGGAAACAACACTAACATCAATGAATCGTCACAGCACGATTCACAAAGCGGCAAGAATGAGATGAACCCTCAAAGTCCCAAATTACCTAATGAGTTTGGAGTGAGTGGTGCAGATTATGGACATGGTTACTTCACACTGAATGAACCAAAATATGATGATGGAAGCAATGAAAATGACCACATGAATAACAATAGGCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCGATGTTTGCTTTGTGGAATGAATGA 1767 0.3797 MSNWLGFSLTPHLRIDEEFGRENQNQNQEHHGEGSEIIGRNYVPPSSSSHHQHLHNHLSVMPLRSDGSLCVSDTFTHSVTPQEWRYENAITDGNSNEEGPKLEDFLGCYQNQNQNSTTNTISKINVNVTPSFCTNNNTEIETRENLTNQSLIHSFHHGYNDNNNNNNHHGLIHGNSMYKSWMSQNHFSCDGKNSSDGNGFQSLNLTMSPSVQNGVSVGVGGGAISTVQVNEDPRKRSLSKSNAPREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPISTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLITGDLAKRSPKDSSAPPAATTEDFNSCGSSSTPSQPPPLAITDGEQHSDELSNMVWNSNSEQPPKNECGNNTNINESSQHDSQSGKNEMNPQSPKLPNEFGVSGADYGHGYFTLNEPKYDDGSNENDHMNNNRLGNLGLVNQVPMFALWNE 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00732 588 SMART rav1_2 364 428 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 SMART rav1_2 262 334 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 MobiDBLite consensus disorder prediction 451 534 - -
Trre16g00732 588 SUPERFAMILY DNA-binding domain 363 424 IPR016177 GO:0003677
Trre16g00732 588 CDD AP2 261 330 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 PRINTS Ethylene responsive element binding protein signature 263 274 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 PRINTS Ethylene responsive element binding protein signature 404 424 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 95 512 - -
Trre16g00732 588 ProSiteProfiles AP2/ERF domain profile. 262 328 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 Gene3D AP2/ERF domain 261 330 IPR036955 GO:0003700|GO:0006355
Trre16g00732 588 Gene3D AP2/ERF domain 364 424 IPR036955 GO:0003700|GO:0006355
Trre16g00732 588 ProSiteProfiles AP2/ERF domain profile. 364 422 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 MobiDBLite consensus disorder prediction 226 253 - -
Trre16g00732 588 SUPERFAMILY DNA-binding domain 261 330 IPR016177 GO:0003677
Trre16g00732 588 MobiDBLite consensus disorder prediction 22 36 - -
Trre16g00732 588 Pfam AP2 domain 363 414 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 Pfam AP2 domain 262 320 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 CDD AP2 363 424 IPR001471 GO:0003700|GO:0006355
Trre16g00732 588 FunFam AP2-like ethylene-responsive transcription factor 363 424 - -
Trre16g00732 588 MobiDBLite consensus disorder prediction 441 541 - -
Trre16g00732 588 MobiDBLite consensus disorder prediction 22 54 - -
Trre16g00732 588 FunFam AP2-like ethylene-responsive transcription factor ANT 261 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00732 Trre-Chr16 5558714 5562936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00732 1 452 AP2-EREBP Transcription Factor Family AT1G72570 49.367 1.75e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g00732 AP2 7.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00732 K09285 - gmx:100809762 814.683